Ochotona curzoniae (black-lipped pika): 121172331
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Entry
121172331 CDS
T11174
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121172331 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121172331 (CLP1)
Enzymes [BR:
ocz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121172331 (CLP1)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121172331 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
MMR_HSR1
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
121172331
NCBI-ProteinID:
XP_040860124
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MGEESSDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPSIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQLFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggagagcagcgacgacaagaagcccacgaccaagttcgaactggagcgggaa
acagagcttcgcttcgaggtggaagcctcgcagtccgttcagctggagctgctcaccggc
atggctgagatctttggcaccgagctgactcggaacaagaagttcaccttcgacgctggt
gccaaggtggctgttttcacgtggcatggctgctctctgcagctgagcggccgcaccgag
gtggcttatgtctccaaggacaccccgatgctgctttacctcaacactcacacagccttg
gagcagatgcggaggcaggcggagaaggaagaagagcggggaccccgagtgatggtggtg
ggccccaccgacgtgggcaagtccaccgtgtgtcgcctgctgctcaactacgctgtgcgc
ttgggtcgccgtcccacctacgtggagttggacgtgggccagggctccgtgtccatcccc
ggcaccatgggggccctctacatcgagcggccagccgacgtggaagaagggttctctata
caagcccctctggtgtatcattttggctccaccactcctggcacaaacatcaagctgtat
aacaagatcacatctcgtttagcggatgtgttcaaccagaggtgtgaggtgaaccgcaga
gcatctgtgagtggctgtgtcatcaacacctgtggctgggtcaagggctctggttaccag
gccctggtccatgcagcttcagcctttgaggtcgatgtcgtcgtcgtgctggatcaagaa
cgactgtacaacgaactgaagcgggacttgccccactttgtgcgcaccgtgctgctgccc
aagtccggcggtgtggtggaacgctccaaagacttccggcgggaatgcagggacgagcgc
atccgggagtacttctacggattccgaggctgcttctatccccacgccttcaacgtgaag
ttttcagacgtgaagatctacaaagtgggggcacccagcatccccgactcctgtttgcct
ttgggcatgtctcaggaggacaatcagctgaagttggtgcccgtcacgcccggccgggac
atggtacaccacctgctgagtgtgagcaccgccgagggcacggaggagaacctctccgag
accagcgtggctggcttcattgtggtcaccagcgtggacctggagcaccagctgttcacc
gtgctctctccagccccccgccccctgcccaagaacttcctcctcatcatggacatccgg
ttcatggatctgaagtag
DBGET
integrated database retrieval system
