Ochotona curzoniae (black-lipped pika): 121172477
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Entry
121172477 CDS
T11174
Symbol
WHRN
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocz03037
]
121172477 (WHRN)
Cilium and associated proteins [BR:
ocz03037
]
Primary cilia and associated proteins
USH complex and associated proteins
121172477 (WHRN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
CCM2_C
USH1C_N
HHD_RTEL1
T15H9-4_C
Motif
Other DBs
NCBI-GeneID:
121172477
NCBI-ProteinID:
XP_040860418
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLNEAEREQFTH
CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
PYRQPAWAGPDGAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
GRSTSPPAGLPQPHGSALNQPDGDRRSTLHLLQGGDEKKVNLLLGDGRSLGLTIRGGAEY
GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLSILHDEAVKLLKSSRHLMLTVKDVG
RLPHARTTVDETKWIASSRIGEIATNSGFPGDLTAEGTHKLGFYKGLAGSQVTLSSLGNQ
VRVLLEEQARHLLTEQERATLAYYLQEYRVGSVSVDALTMALFELLNTHAKFSLLSEVRG
VISPQDLDRFDHLVLRREIESMKARQPLGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSSA
RERLLWLIDLMENTLDLEETGEAVQSNANALPDVSVDDVKPTCEGLPSCKPPPPPPALGQ
LKKPGREDPPAPSSASSHSGIVFSVPRTRSPPAGTAATLGIPSAQDSPSSPIYASVSPTN
PGSKRPLDAHLARVSQHPIGPFPRVQSPPHLKSPPAEATGAGGCLPPLSPSGHPDQVGSN
QHFVMVEVHRPDSEPDVNEVRALPQARTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGR
GRQTAPTKSRNSKELPRSERTPEAASKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQ
PLPRIVTIQRGGSAHNCGQLKVGHIILEVNGVPLRGKEHREAARIIAEAFKTKDRDCIDF
LVTEFNVML
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgctggacggcctgtcggtgagctcgtcttccaccggctcgctgggctcg
gcggccggggcgggcggcggcgggggcgcggggctgcggctactgtctgccaacgtgcgc
cagctgcaccaggcactgacggcgctgctgaacgaggcggagcgggagcagttcacacac
tgcttgaacgcctaccacgcgcgccgcaacgtcttcgacctggtgcgcaccctgcgcgtg
ctgctggacagcccggtcaagcggcgcctgctgcccatgctgcgcctggtcatcccgcgc
tccgaccagctgctgttcgaccagtacacggccgagggcctctatctgcccgccaccacc
ccctacaggcagcccgcctgggccggccccgacggcgcggggcctggggaggtgcgcctg
gtgagcctgcggcgcgccaaggcgcacgagggcttgggtttcagcatccgcggcggctcg
gaacacggcgtgggcatctatgtgtcgctggtggagccgggctccctcgctgagaaagaa
gggctgcgcgttggagatcagattctgcgcgtcaacgataaatccctggcccgagtaacc
catgcggaggcagttaaggctctgaagggctccaagaagctagtgttgtcagtgtactca
gcgggccgcatcccgggcggctatgtcaccaaccacatctacacctgggtggaccctcag
ggccgcagcacctccccacctgccggcctgccccagccccatggcagtgccctgaaccag
cctgatggggaccgcaggagcaccctgcacctgctacagggtggggatgagaaaaaggtg
aacttgctgctgggtgatggccgctccctgggcctcaccatccgagggggcgctgagtac
ggcctgggcatctacatcaccggagtggacccaggttcggaggcagaaggcagtgggcta
aaggtcggggaccagattctggaggtgaatgggcggagctttctcagcatcctgcacgac
gaggcggtgaagctgctcaagtcctcgcgacacctcatgctgacagtgaaggatgttggg
aggctgccgcatgcccgcaccaccgtggatgagaccaagtggattgccagttcccgcatc
ggggagatcgccaccaactcagggtttcctggggacctcacagcagaagggacacacaag
ctgggattttacaagggcctggcgggctcacaggtgaccctcagcagcctggggaaccag
gtgcgtgttctgcttgaggagcaggcccggcacctgctgacggagcaggagcgtgccacc
ctggcctactacctgcaggagtaccgtgtgggcagcgtctcggtggacgccctcaccatg
gccctgttcgagctactcaacacccacgccaagttctcgctcctctcggaggtgagaggc
gtcatctccccgcaagacctggaccgttttgaccatctggtgctgaggcgtgagatcgag
tccatgaaggcacggcagcccctaggccctggggccggggatacctactccatggtctcc
tacagcgacacgggttcctccacgggcagccatggcacctccaccaccgtcagctcggcc
agggagcggctgctgtggcttatagacctgatggagaacaccctggacctcgaggagact
ggcgaggctgtccagagcaatgccaatgccctccctgatgtgtccgtggatgacgtcaaa
cccacctgcgaggggctgcccagctgtaagccgccacctcccccacccgctctgggccag
ctgaagaagccagggcgagaggaccccccggcgccctcctcagcctcttcccactcgggc
atcgtcttctcagttcccaggacacgcagcccaccggcaggcactgcagccaccctgggg
atcccttccgcacaggactcgccctcctcccccatctacgcatctgtctcccctaccaac
cccggctccaagaggccactagatgcccacctggccagggtcagccagcaccccatcggc
cccttccctcgggtccaatcaccccctcacttgaaaagccccccagctgaggccacgggg
gccgggggctgcctgccgccactctcgccttctggccacccggaccaagtgggcagcaac
cagcacttcgttatggtggaggtccaccggccagacagcgagcctgatgtgaacgaagtg
agggcgctgccccaggcacgcacagcctccacactctcacagctctcagacagcgggcag
accctgagcgaggacagtggcgtggatgctggggaggctgaggcaagcgccccaggtcgg
ggcagacagacagcacccaccaagagcagaaatagcaaggagctaccccggagtgagagg
accccagaggcggccagcaaaccacctggactgctggagcccacgtccaccctggttcgc
gtcaagaagagtgcagccaccctgggcattgccatcgaggggggtgccaacacacgccag
cccctgcctaggatcgtcactattcagagaggcggctcagcccacaactgtgggcagctc
aaggtgggccacataattctggaggtgaacggggtgccactgcggggcaaggagcaccgt
gaagctgcccgcatcatcgctgaggccttcaagaccaaggaccgtgactgcatcgacttc
ctggtcaccgagttcaacgtgatgctctag
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