Oryx dammah (scimitar-horned oryx): 120855028
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Entry
120855028 CDS
T07255
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03082
ATP-dependent chromatin remodeling
oda04714
Thermogenesis
oda05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120855028 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
120855028 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
120855028 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oda03000
]
120855028 (ARID1A)
03021 Transcription machinery [BR:
oda03021
]
120855028 (ARID1A)
03036 Chromosome and associated proteins [BR:
oda03036
]
120855028 (ARID1A)
Transcription factors [BR:
oda03000
]
Eukaryotic type
Helix-turn-helix
ARID
120855028 (ARID1A)
Transcription machinery [BR:
oda03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120855028 (ARID1A)
Chromosome and associated proteins [BR:
oda03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120855028 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120855028
NCBI-ProteinID:
XP_040085494
LinkDB
All DBs
Position
Unknown
AA seq
2285 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQQQQREEAGGEAAAAVAAERGEMKAAAGQES
EGPAVGPPQPLGKELQDGAESNGGGGGGGAGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPG
SGAAAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAAGGTPQPTATPTLNQL
LTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRS
HHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGY
PGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPH
PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQPSPTPYPSQ
QSSTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRF
PPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGAL
SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPA
AVPAGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQP
SGGQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMG
AGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQE
TAVAMHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMAN
NSAGMAASPEMMGLGDVKLTPASKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGG
EPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWREL
ATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKVQPPSPA
GSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSD
PTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGNDPFMSSGQGPNGGM
GDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQTNLMPSNPDS
GMYSPSRYPPQQQQQQRHDSYGNQFSAQGTPSGSPFPSQQTTVYQQQQNYKRPMDGTYGP
PAKRHEGEMYSVPYSAGQGQPPQQQLPPAQPPPANQQQAAQPPPQQDVYNQYGNAYPATA
AAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASAEVAQQGTMWQ
GRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSA
PVPPMTRPPPANYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPP
VPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDNSIMTFSLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDP
GQRTLLDPGRFSKASSPAPVEGEEEEDLLGPKLEDEEEEEVSENDEEMAFSGKDKAASEN
SEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPSRPHVPCPPVPRKYVTAVEGTPGTTEQEGPPPDGPPEKRITATMDDMLSTRSS
TLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKR
CICVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQG
VSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQ
DPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKN
PVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQN
PPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLF
LIGQS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcagcagcagcgggaggaggcggggggcgag
gcggcggcggcggtcgcggcggagcgcggggaaatgaaggcagccgccgggcaggaaagc
gagggccccgccgtggggccgccgcagccactgggaaaggagctgcaggacggggccgag
agcaatgggggtggcggcggcggcggagccggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggtggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggcc
gccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggcggcggccgccggctccaagccgcctccctcctccagcgcctcc
gcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggc
ccctcagcggccgctgggggaaccccccagcccaccgccacccccaccctcaaccaactg
ctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacggcggc
gggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggg
gctgctgctgctgcggcggcggcagccgcggccgcctcgggaggggcccaacaaaggagc
caccacgcgcccatgagccctgggagcagcggcggcggggggcagccgctcgcccggacc
ccgcagccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcggg
actaacccatactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtac
ccagggcagccatatgggtcccagaccccacagcggtacccgatgaccatgcagggccga
gcgcagagtaccatgggcggcctctcgtatgcacagcagattcctccttatggacagcaa
ggccccagcgggtatggtcagcagggccagactccatattacaaccagcaaagtcctcac
ccccagcaacagcagccaccctactcccagcagccaccatcccagaccccccatgcccaa
ccttcgtatcagcagcagcctcagtctcagccaccgcagctccagtcctctcagcctccg
tactcccagcagccgtcccagcctccccatcagccgtccccaactccatacccctcccag
cagtccagcacccagcagcacccccagagccagcccccctactcacagccgcaggcacag
tctccttaccagcagcagcaacctcagcagccagcatcctcgacgctttcccagcaggct
gcgtaccctcagccccagtctcagcagtcacagcaaactgcctactcccagcagcgcttc
cctccaccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctca
atgacctccagtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttcc
agcttgcctgatctgtctggttcaatagatgatctccccatggggacagaaggagctctg
agccctggcgtgagcacatcagggatttccagcagccaaggggagcagagtaacccagct
cagtctcctttctctccccacacctcccctcacctgcctggcatccgaggcccctcccca
tccccggttggctctcctgccagtgttgcccagtctcgctcaggaccactctcgcctgct
gcagtgccagcaggcaaccagatgccacctcggccacccagtggccagtcggacagcatc
atgcatccttctatgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaac
ccccagatgcctcagtacagttccccccagcccgggtcagccttatctccacgtcagcct
tccggaggacagatgcacacaggcatgggctcctaccagcagaactccatgggaagctat
ggtccccaggggagtcagtacggcccacagggaggctaccccaggcagccaaactataat
gccttgcccaatgctaactaccccagtgcaggcatggctggaagcatgaaccctatgggt
gctggaggtcagatgcatgggcagcctggcatcccaccttatggcacactccctcccggg
aggatgagtcacgcctccatgggcaaccggccttatggccctaacatggccaatatgcca
cctcaggttgggtcagggatgtgtccccctcccgggggcatgaaccggaagactcaagaa
actgctgtcgccatgcatgttgctgccaactctatccaaaacaggccacccggctacccc
aatatgaatcaagggggcataatgggaactggacctccctatggacaggggattaatagt
atggctggcatgatcaaccctcagggacccccatatcccatgggtggaaccatggccaac
aattcagcaggaatggcagccagtccagagatgatgggtcttggggatgtcaagttaact
ccagcctccaaaatgaacaacaaggcagatgggacacccaagacggaatctaaatccaag
aaatccagttcttctactacaaccaatgagaagatcaccaagttgtatgagctgggtggt
gagcctgagaggaagatgtgggtggaccgttatctggccttcacggaggagaaggccatg
ggcatgacaaatctgcctgctgtgggtaggaaacctctggacctgtaccgcctctatgtg
tctgtgaaggaaattggtggattgactcaggtcaacaagaacaagaagtggcgggaactt
gcgaccaacctcaatgtcggcacctcaagcagtgctgccagctccttgaaaaaacagtac
atccagtgtctctatgcctttgagtgcaagatcgaacggggagaagaccctcccccagac
atctttgcagctgctgattccaagaagtcccagcccaaggtccagcctccctcgcctgcg
ggatcagggtcgatgcaggggccacagacacctcagtcaaccagcagctccatggcagaa
ggaggagacctgaagccaccaactccagcatccacgccgcatagccagatccccccctta
ccaggcatgagtaggagcaattcggtcgggatccaggatgcctttcctgatggaagtgac
cccacattccagaagcggaattccatgactccaaaccctgggtaccagcccagtatgaat
acctccgacatgatggggcgcatgtcctacgagccaaataaggatccttacggcagcatg
aggaaagctccggggaacgatcccttcatgtcctcaggtcagggccccaatggcgggatg
ggggacccctacagtcgagctgccggccctgggctgggaaatgtggcaatgggaccgcga
cagcactatccctatggaggtccttatgacagagtgaggacggagcctggcataggacct
gaaggaaacatgggtactggggccccgcagacgaatctcatgccttccaacccagactcg
gggatgtattctcccagccgttacccgccacagcagcagcagcaacagcgacatgattcc
tatggcaatcagttctccgctcaaggcaccccttccggcagccccttccccagccagcag
accacagtgtatcagcagcagcagaattacaagcggccgatggatggcacctacggccct
cctgccaagcggcacgaaggggagatgtacagcgtgccgtacagcgcagggcaggggcag
cccccgcagcagcagctgccccccgcccagcccccgcctgccaaccagcagcaagctgct
cagcctccccctcagcaggatgtgtacaaccagtacggaaacgcctatcctgccactgcc
gccgctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattccagttt
ggccgggaccgtgtctcagcaccccctggctccaatgcccagcagaacatgccaccacag
atgatgggtggccccatacaggcatcggctgaggttgcccagcaaggcaccatgtggcag
gggcgcaatgacatgacctacaactacgccaacaggcagagcacgggctcggccccgcaa
ggccccgcctatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagggcc
aaccatgaaggcccgtggccttcccatggcacacgccagcccccctatggtccttctgcc
cccgtgccccccatgacaaggccccctccagccaactaccagcccccaccaagcatgcag
aatcacattcctcaggtatccagccccgctcccctgccccggccaatggagaaccgcacc
tctccgagcaagtctccattcctgcactctgggatgaagatgcagaaggcagggccccca
gtacccgcctcgcacatagcacctgctcctgtgcagccccctatgattcggcgggacatc
accttcccacctggctctgttgaagccacacagcctgtgttgaagcagaggaggcggctc
acaatgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaagtctggg
ctgctggcagagagcacgtgggcattagacaccattaacatcctgctgtacgatgacaac
agcatcatgactttcagcctcagtcagctcccagggttgctcgaactccttgtggaatat
ttccgacgttgcctgattgagatctttggcattttaaaggagtacgaggtgggtgaccca
ggacagagaacgctgttggaccctgggagattcagcaaagcgtctagtccggcccctgtg
gagggggaggaggaggaagaccttcttggtcccaaactagaggatgaggaggaggaggaa
gtaagtgaaaatgatgaggagatggccttttcgggcaaggacaaagcagcctcagagaat
agtgaggagaaactgatcagtaagtttgacaagcttccagtaaagatcgtgcagaagaat
gacccgtttgtggtggactgctcagataagcttgggcgcgtgcaggagtttgacagcggc
ctgctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgag
agcaagacagagctgctgccatcccggcctcacgtgccctgcccaccagtccctcggaag
tatgtcacagcagtagagggcacaccagggacaacagagcaggagggccccccgcctgat
ggccctccagaaaaacggatcacggccactatggatgacatgttgtccacgaggtctagc
acactgaccgaggagggagctaagagtgtagaggccaccaaggaaagcagtaagtttcca
ttcggcatcagccctgctcagagccatcggaacatcaagatcctagaggatgaaccgcac
agtaaagatgagaccccactgtgtacccttctggactggcaggattcccttgccaaacgc
tgcatctgtgtctccaacaccatccgaagcctgtcatttgtgccaggcaacgactttgag
atgtccaaacacccggggctgctgctgatcctgggcaagctgatccttctgcaccacaag
cacccggaacggaagcaggcaccactaacttacgagaaggaggaggagcaggaccaaggg
gtgagctgcaacaaagtggagtggtggtgggactgcttggagatgcttcgggaaaacacc
ttggtcacgctcgccaacatctcggggcagttggacctctccccataccccgagagcatt
tgcctgcctgtcctggacggactcctacactgggcagtctgcccttcagctgaagcccag
gaccccttctccaccctgggccccaacgccgtcctttccccccagagactggtcttggaa
accctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacgcccccc
ttcagccgcttggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaac
ccagtgtgccgggagatggctgtagtcctgctggccaacctggcacagggcgacagcctg
gcagcccgtgccatcgcagtgcagaagggcagcatcggcaacctcctgggcttcctggag
gacagccttgcggccacacagttccagcagagccaggccagcctgctccacatgcagaac
ccgccctttgagccaactagtgtggacatgatgcgacgggctgcccgtgcgctgctggcc
ctggccaaggtggacgagaaccactcggagttcacgctgtatgagtcacggctgttggac
atctcggtatcaccgttgatgaactcattggtttcacaagtcatttgtgatgtactgttt
ttgattggccagtcatga
DBGET
integrated database retrieval system
