Oryx dammah (scimitar-horned oryx): 120858139
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Entry
120858139 CDS
T07255
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda04151
PI3K-Akt signaling pathway
oda04510
Focal adhesion
oda04512
ECM-receptor interaction
oda04974
Protein digestion and absorption
oda05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
120858139
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120858139
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120858139
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
120858139
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
120858139
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oda00536
]
120858139
Glycosaminoglycan binding proteins [BR:
oda00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120858139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
120858139
NCBI-ProteinID:
XP_040089927
LinkDB
All DBs
Position
Unknown
AA seq
1488 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGRQPGPKGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM
GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGAR
GLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEP
GDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAAGAPGAPGPPGSPGPA
GPVGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAGSNLRQHDAEVDATL
KSLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET
GETCVYPNPASIPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCT
KHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGADIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtggtcggcaa
ccaggaccaaagggacagaaaggagaacctggagacatcaaggatatcgtaggacccaaa
ggacctcctggacctcagggacctgcaggtgaacaaggtcccagaggtgatcgtggtgac
aaaggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctgga
aaccctggcccccctggtcctcccggcccccccggcccccctggccttggtggaaacttt
gctgcccagatggctggtgggtttgatgagaaggctggtggcgcccagatgggagtgatg
cagggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccgga
cctcaaggatttcaaggcaaccctggtgaacctggggaacccggtgtctctggtcccatg
ggcccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaag
cctggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccagga
accccaggccttccaggtgtcaaaggtcacagaggttacccaggtctagatggtgctaag
ggagaagctggtgctccgggtgtgaagggtgagagtggttccccaggtgagaacggttct
ccaggtccaatgggtccccgtggcttgcctggtgagagaggacggactggccctgccggc
gctgcaggtgctcgaggcaatgacggtcaaccaggccctgcagggcctccgggtcccgtg
ggtcctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggcccc
accggtgctcgaggtcccgaaggcgcccagggtcctcgcggtgaacctggtactcctggg
tcccctgggccagctggcgccgctggcaaccctggaactgatggaatccctggagccaag
ggatctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtcca
cccggccctcaaggtgcaactggtcctctgggtccgaaaggtcaaacgggtgagcctggt
attgctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaa
ggagcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagagcctggtggt
gctgggcccgccggtccccctggagaaagaggtgctcctggcaaccgtggtttcccaggt
caggatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggccttgct
ggtcccaaaggagccaacggtgaccctggccgtcccggagagcctggccttcctggagcc
cggggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctgga
gcccctggtgaagatggtcgccctggacccccaggccctcagggagctcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgag
aaaggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggt
gctgcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcct
gggccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaaa
ccaggtgaccagggtgttcctggtgaagctggagctcctggcctcgtgggtcccaggggt
gaacgaggtttccctggagaacgtggctcccccggttcccagggcctccagggggcccgc
ggcctccctggcactcctggcaccgatggtcccaaaggcgcagctggcccagctggcccc
cctggggctcagggccctccaggtctgcagggcatgcccggtgagaggggagcagctggt
attgccggacccaagggagacaggggtgacgttggtgagaaaggccctgagggcgcgccc
gggaaggacggtggacgaggtctgactggccccattggcccccctggcccagccggtgcc
aacggtgagaagggagaagttggaccccctggtcctgccggaactgctggtgctcgaggc
gccccgggtgaacgcggagagacaggcccccctggacccgctggattcgccggcccccct
ggtgctgatggccagcctggtgccaaaggtgaacaaggagaagctggccagaaaggtgac
gctggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggt
gtgactggtcctaaaggagcccgaggtgctcaaggccccccgggagctaccggattcccc
ggagcagctggccgcgtcggacccccaggctccaatggcaaccctggaccccctggtcct
cctggtccttctggaaaagatggtcctaaaggtgctcgaggagacagtggcccccctggc
cgagctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcct
ggagatgatggtccttctggtcccgacggtcctccaggtcctcagggtctggctggtcag
aggggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggcctccccggc
ccctcgggtgagcctggtaagcagggagcccctggagcatctggagaccgaggtccccct
ggccctgtgggtcctcctggcctgactggtcctgctggcgagcctggacgtgagggaagc
cccggtgctgacggcccccctggcagagatggcgcggctggagtcaagggtgaccgtgga
gagactggcgctgcaggtgcccccggagcccctgggccccctggctctcctggtcccgcc
ggcccagttggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggaccc
gcaggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaagga
gaaactggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcag
ggtctgcccggcccccctggtccttctggagaccagggtgcctccggtcctgcaggtcct
tctggccccagaggtcctcctggccccgtcggtccctctggcaaagatggtgctaacgga
atccctggccccattggacctcctgggccccgtggacgttccggcgagactggccctgct
ggtcctcctggaaaccctggcccccctggccctcctgggccccccggccctggcatcgac
atgtccgcctttgctggccttggccagagagagaagggccccgaccccctgcagtacatg
cgggctgacgaggcaggcagcaacctgagacagcatgatgccgaggtggacgccacactc
aagtccctcaacaaccagatcgagagcctccgcagccccgagggctcccgcaagaaccca
gctcgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagattactgg
atcgaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagact
ggcgagacctgcgtctaccccaacccggccagcatccccaagaagaactggtggagcagc
aagagcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccatttc
agctatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgc
ctgctgtccaccgagggctctcagaacatcacctaccactgcaagaacagcattgcctac
ctggacgaagctgctggcaacctcaagaaggctctgctcatccagggctcaaatgacgtg
gagatccgggctgagggcaacagcaggttcacatacaccgttctgaaggatggctgcacg
aaacacaccggtaagtggggcaagactgtgattgagtaccggtcacagaagacctcacgt
ctccccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgcg
gacatagggcctgtctgcttcttgtaa
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integrated database retrieval system
