Oryx dammah (scimitar-horned oryx): 120862816
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Entry
120862816 CDS
T07255
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120862816 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120862816 (PNLDC1)
Enzymes [BR:
oda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120862816 (PNLDC1)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120862816 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120862816
NCBI-ProteinID:
XP_040094859
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MTSLAIVCAWGLLSFFASPAGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFT
ICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGFDYNKF
LKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPG
IAGFQAFEVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLENTSCDRESCWKEKILLS
ARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKLFRPLPESYDEFKLNIHNLFPVLIDTK
NVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPHEAAYD
AFLCGSVLLKVAHLLLWKVHSAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFAGPD
SPSIRPPILILTVRKWPGVSEQQVYREFQNFCKFDVRRLTRSQFLLMTNKFKDTRSILKE
YKCHPTLRISLYRYWRHSPNINCLLQVCGVITTWAFIAFLLGGAGP
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgacgagccttgcgatagtctgtgcctggggactcttgtctttttttgcctcccctgca
ggtctggacatagagttcacgggccttcgttctaacctgtctgggccccagcagatcagt
ctgtttgacttgccatcagagtggtatctaaagacccgtcagagtgttcagcaattcacc
atctgtcagatcggattgtctgtgttctccagtattgaaggcgagtcgaacaagtatgta
gctcattcttgtaacttcttcctcttccctacaacatttggggttttggactcagagttc
tctttccaggcttccagtgttcagtttttgaatcagtatggcttcgactataacaagttt
ctcaaaaatggaatcccttatatgaacgaagaacaggagaagaaaattaagcacaacatc
ctgactgggaactggaaagttcgcagctctctggacaaagaccagatcaaggtggtgatt
gacgaggtgacacgctggctggacctggcggaggaaggggactggatgaccctccctggt
atcgccggcttccaggccttcgaggtccagctcgtactgaggaaggccctccctgacatc
tggacggtgctgagagaccaaggggtgattgtaaagaaggtgagtacgcagcaccgctgg
tatcttgagaacacctcctgtgaccgagagagctgctggaaggagaagatccttctctct
gcgaggggcttttctgtgtttttccagatgctggtgaaagcccggaagcccttagtggga
cataacatgatgatggacctgctgcatctccacgagaagctcttccggcctctcccagaa
agctacgatgaatttaagctgaatatccacaacctatttcctgttctcattgacaccaag
aatgtgacgaaggatatctggaaggaactcaattttccaagggtttcaaatctctcagaa
gtttatgaagtcctgaacagtgacttgaaccccaccaagaactccgggccggtgatcatt
cacgccagcaggtgtgagaagtacgtggagaccaagtacccccacgaagcagcgtacgac
gccttcctgtgcgggtcagttctgttgaaagtggcgcacctgctcctgtggaaggtacac
agcgctgttcccatccctgagcccagcttcccgctctacctggacgtgctggcgccctac
gtgaaccaggtgaatcttatccgagccggggtccccaaaatcaactttgcgggcccagac
tcccctagcatccgcccccccatcctcatcctcaccgtcaggaagtggccaggagtcagc
gagcagcaggtctaccgcgagtttcagaacttctgcaaattcgacgtcaggaggctcacg
cggagccagttcctgctcatgaccaataagttcaaggacacgcggagcatcctgaaggag
tacaagtgccacccgacgctgcggatctccctgtaccgctactggagacactccccgaac
atcaactgcctgctacaagtctgcggcgtcattaccacctgggccttcatcgcgtttctc
ctgggaggagctggtccttga
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