Oryx dammah (scimitar-horned oryx): 120863910
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Entry
120863910 CDS
T07255
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120863910 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120863910 (XAB2)
03041 Spliceosome [BR:
oda03041
]
120863910 (XAB2)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120863910 (XAB2)
Spliceosome [BR:
oda03041
]
Complex B
Other components
Prp19-related factors
120863910 (XAB2)
Complex C
120863910 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
120863910
NCBI-ProteinID:
XP_040096505
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSKPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgaagcccgagcgaccggaccttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaaactgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgagcg
caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgaaagcgct
gaggagtatatcgagtacctcaagtcaagcgaccggctagatgaggcggcgcagcgcctg
gccaccgtggtgaacgatgagcgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcactggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
caattcgaagagagtatgatcgcagcgaagatggagaccgcctcagagctggggagggag
gaggaggatgacgtagacctggagctacgcctggcccgcttcgaacagctcatcagccgg
cggccgctgctcctcaacagtgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaggccactggcaagccccacacgctgtgggtcgcg
ttcgccaagttttacgaggacaacgggcagctggacgatgcccgagtcatcttggagaaa
gccaccaaggtgagtttcaagcaggtggacgacctggccagtgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagccttggcaccttc
cagtccaccaaggcagtgtatgaccgcatcctggacctgcgcatcgccacgcctcagatc
gtcattaactacgctatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgttgttcaagtggcccaacgtgtcagacatctggagtacctac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggcgctggatggctgccctcccaaatatgccaagacgctgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcgacatgccatggcagtgtatgagcgtgccacc
agggctgtggagcccgcgcagcagtatgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagtatctatcagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
ggggccttctggcaaacgtggaaggactttgaggtccggcatggcaatgaggacaccatc
cgggagatgttgcggatccgccgcagcgtgcaggccacgtacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtctgacctggcc
cccgggcagagcggtatggatgacatgaaactgctggagcagcgtgcggagcagttggcg
gcggaggcggagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggctgagctggcccagcaggccaacccagaggagattgag
ctgggcgaggatgaggatgaggatgagatggacctggagcccaacgaggtgcgcctggag
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagactga
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