Oryx dammah (scimitar-horned oryx): 120865181
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Entry
120865181 CDS
T07255
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
120865181 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oda00536
]
120865181 (COL13A1)
Glycosaminoglycan binding proteins [BR:
oda00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120865181 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120865181
NCBI-ProteinID:
XP_040098127
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MVAERSRKATAAGARGPGELGAPGTVALAVAPAERCARLPSPGSCGLLALALCSLALSLL
SHFRTVELQARVLRLEAERGEQQMEPAILGRVNQLLGEKWKLHSRRRRETLKTSPGCHCP
PGPPGPAGRPGLPGDKGAIGMPGRVGGKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGRPGPKGEMGPQGQKGEKGQCGEYPHREHLSGSLAALRSNQIITLKGE
QGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGM
PGMPGKHGAKGEPGIPGAKGEKGAVGSPGPLGLLGQKGEKGDAGNSIGGGRGEPGPPGLP
GPPGPKGEAGADGQAGPPGRQGDKGEPGAAGEQGPTGPKGSKGETGKGEMVDYNGNINEA
LQEIRTLALMGPPGLPGQIGPPGPPGIPGEKGEIGLPGPPGLDGEKGPRGKPGDVGPPGP
QGPPGKPGPAGVKGEDGLPGSPGEKGERGETGQPGPPGLDGPTGEKGEPGDQGRAGATGL
PGPIGLPGFIGEKGEPGEKGDPGMEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEK
GVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAA
GLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgctcccgcaaagcgacagccgccggtgcccgcggccctggggagctg
ggcgcacccgggacagtggcgctggcggtggcgccggcggagcgctgcgcgcggctgccg
agcccggggtcgtgcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
tcccactttcggacggtcgagctgcaggcccgggtgctgcgcctggaagcggagcgtggg
gagcagcaaatggagccggctattttgggacgagtcaaccaactgctgggtgagaaatgg
aagctccactcacggaggcgccgggagaccctgaagacatccccaggatgtcactgcccg
ccagggcctcctggtcctgctggaagacccggcctcccgggggacaaaggtgccattggg
atgcctggacgtgtgggaggaaagggccaaccaggcgagaagggcgccccaggagatgcc
ggcatgtccatcattggtccccgtggcccccctggtcagccaggcacccgaggttttcca
ggatttccgggtcccatcgggctcgacggcaaaccgggccggccaggaccaaagggggag
atgggacctcaaggacaaaagggagaaaagggtcagtgtggcgagtacccacaccgggag
cacctaagtggctctctagcagctctgcgctccaaccagataattactctgaagggtgaa
cagggccaggctggcatccaaggcccaccagggccaccaggccctcctggaccgagtgga
cctctggggcacccaggactgccagggcccatggggccaccgggcttacctgggcctcct
ggaccgaagggagacccaggcatccagggctaccatggccggaagggagaacggggcatg
ccagggatgccgggcaaacacggagcaaagggtgaacctgggatcccaggagccaagggt
gaaaagggggctgtggggtccccagggccactcggcctcttggggcagaagggagaaaaa
ggcgatgctggcaactccattggaggaggcagaggggagcccggtcccccagggcttcct
ggacccccagggccaaagggggaagctggagcagatggccaggcaggccccccaggacgg
caaggagacaagggggagcctggagcagctggtgaacagggacctactggccccaagggc
tccaagggcgaaactgggaagggagagatggtggactacaacggcaacatcaacgaggct
ctccaggagatccggacactggccttgatggggccgcctggtcttcctgggcagatcggc
ccacccggacctccagggatcccaggcgagaagggggagattggactgccaggccctccc
ggactcgatggggaaaagggacctcgaggcaaaccaggagatgtgggccctcctggtccc
caaggccccccaggaaagcctgggcctgcaggagtgaagggagaagacggcctcccgggg
agcccaggagagaagggggagagaggggagacggggcagccaggaccaccgggtctagac
ggcccaactggggagaaaggagaaccaggtgaccaagggagagccggagcgactggactt
cctggcccaatcgggctcccaggatttataggagagaaaggagaaccaggggagaagggt
gacccaggaatggaggttcctgggccaccagggccagaggggcctcctggacctccgggg
ctccaaggcgttcctggaccaaagggggaagccggactagacggagcaaaaggagaaaaa
ggcgtccagggagaaaaaggagaccgaggtcctctgggattacccggagcttcaggtttg
gacggcaggcctgggccaccgggtactccaggaccaatcggagttccaggcccagcggga
ccaaagggagagaggggcagcaaaggtgaccctgggatgacaggaccaacgggagcagct
gggcttcctggtttacacggaccacccggggacaaaggaaaccggggggagaggggaaag
aaaggctctagagggcctaagggggataagggagaccaaggagcgcctggattagatgcc
ccctgtccattgggtgaagatggcttgccagttcagggctgctggaacaagtga
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