Oryx dammah (scimitar-horned oryx): 120866362
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Entry
120866362 CDS
T07255
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120866362 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oda03400
]
120866362 (LIG3)
Enzymes [BR:
oda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120866362 (LIG3)
DNA repair and recombination proteins [BR:
oda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
120866362 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120866362
NCBI-ProteinID:
XP_040099971
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MTLAFKILFPPTLRALRKKELCLFREQRHRPDIRHFGQWSEIVLRGHHLLQRRKPVPSFW
ESNLRPRAACLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEENEKEQISQH
IADLSSKATSTPKKKAVVQAKLTATGQVASPVKGASFVTNSNPRKFSGFSAKPNNSGEAH
SSPTPKTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGD
GFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSADDMTRDLEQGDVSETIRVF
FEQSKSFPPAAKSLLTIQEVDEFLLRLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIK
HDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASL
MTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK
VAHFKDFIPQAFPGGHSMILDSEVLLIDNRTGRPLPFGTLGVHKKAAFQDANVCLFVFDC
IYFNDVSLMDRPLCERRKLLYDNMVEIPNRIMFSEMKQVTKASDLVDMINRVIREGLEGL
VLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD
PSSQKWCTVTKCAGGHDDATLARLQTELDMVKISKDPSKIPNWLKINKIYYPDFIVPDPK
KAAVWEITGAEFSKSEAHTADGISIRFPRCTQIRDDKDWKSATNLPQLKELYQLSKERAA
FAIMAGDEGSSAAGGSSGENEGTSGPAVPHKAPRASPKQPPTSAKKAGSKPGGGNLPAAK
PSPVRVGVKRKAPDVTPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFD
VGSATHMLGGRDRNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgactttggcttttaagatcctcttcccaccaactctccgtgcactcaggaaaaaagaa
ctgtgcctattcagagaacaacgtcaccggcctgacataagacactttggccagtggtca
gagatagttcttcgtggacaccacctcctccagagaagaaagcctgttccgtccttttgg
gaaagcaacctaagaccacgtgccgcctgccttgttttcttgccagggtcgcatgtggga
ctctgcagtggtccctgtgagatggcagagcaacgcttctgtgtggactacgccaagcgt
ggcaccgccggctgcaaaaaatgcaaggaaaagattgtcaagggcgtatgccgaatcggc
aaagtggtgcccaatcccttttcagagtcggggggcgatatgaaagagtggtaccacatt
aaatgtatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggacctc
accgagctggaaggctgggaagagctggaagagaatgagaaagagcagataagtcagcac
attgcagatctatcttccaaggcaacaagcacaccaaagaagaaagctgttgtccaggct
aagttgacagccactggccaggtagcatctccagtgaaaggtgcctcatttgtcaccaat
tccaatccccgaaagttttctggcttttcagccaagcccaacaactctggggaagcccac
tccagccctacccctaagacccctaagacaagtctgtcctcaagcaaatgtgaccctaaa
cacaaggattgtctgctgcgtgagtttcggaagttgtgtgccatggtggctgaaaatcct
agctacaacacgaaaacccagatcatccaggacttccttcagaaaggctcagcaggagat
ggtttccacggtgacgtgtacctaacagtgaagctgctgctgccgggtgtcattaagagt
gtttacaacttgaatgataagcagatcgtgaagcttttcagccgcatttttaactgcagc
gcagatgacatgacacgagacctggagcagggtgacgtgtcagagacaatcagagtcttc
tttgagcagagcaagtctttccctccagctgccaagagcctccttaccatccaggaggta
gacgaattcctcctgcggctctccaggctcaccaaggaggatgagcagcaacaggctctg
caggatatcgcctccaggtgtacagccaacgaccttaagtgcatcatcaggctgatcaag
catgatctgaagatgaactcaggtgcaaaacacgtgttagatgccctagaccccaatgcc
tatgaagccttcaaagcctcacgcaacctgcaggatgtggtggagcgggtcctccgcaac
gagcaggaggtggagaaggagccaggccagagacgagctctgagtgtccaggcctctctg
atgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgagtatgccatgaag
aagtgtccgaacggcatgttctctgagatcaagtatgacggggagcgagtccaggtgcat
aaaaagggggaccacttcagctacttcagccgcagtctcaagcctgtcctgccacacaag
gtggcccactttaaggacttcatcccccaggctttccctgggggccacagcatgatcttg
gactctgaggtgctcctgattgacaacaggacaggcagaccactgccctttgggactctg
ggagtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgt
atctacttcaatgatgtcagcctgatggataggcctctgtgtgagcggcggaagcttctt
tatgacaacatggtggaaattcccaaccggatcatgttctcagaaatgaagcaagtcaca
aaagcttccgacttggtggacatgatcaacagggtgatccgagaggggctggaagggctg
gtgctaaaggacgtgaagggtacatatgagcctggaaagcggcattggctgaaagtgaag
aaagactatttgaatgagggtgccatggccgacacagctgacctggtggtgcttggggcc
ttctacgggcaagggagcaaaggcggcatgatgtccatcttcctcatgggctgctatgac
ccaagcagccagaagtggtgcaccgtcaccaagtgtgcaggaggccacgacgatgcaacg
ctcgcccgcctgcagacggaactggacatggtgaagatcagcaaggatcccagcaagata
cccaactggctgaaaatcaataagatctactaccctgacttcatcgttccagacccaaag
aaagctgccgtgtgggagatcacaggggctgaattctcgaaatctgaggctcacacggcc
gatgggatctccatccgattccctcgctgcactcaaatccgtgatgataaggactggaag
tctgccacgaacctcccccaactcaaggagctgtaccaactgtccaaggagcgggcggcc
ttcgccataatggctggggacgaggggagttccgccgcaggaggcagcagcggggagaac
gagggcacctcagggccggctgtgcctcacaaggccccaagagcctcccccaagcagcct
cccaccagcgccaagaaggctgggagcaagccgggcggcggcaacctgccagctgcaaag
ccctcccctgtgagagtgggagtgaagcggaaggctcctgatgtgaccccgtgccaagcc
aaggtgctgctggacatcttcactggggtgcggctctacctgccaccctccacgccagac
ttcagccgcctcagacgctactttgtggccttcgatggggacctggtgcaggaatttgat
gtgggctcagccacacacatgctgggtggcagggacaggaaccccgaggcccagcaggtc
tccccggagtggatctgggcgtgtatccggaaacggaggctggtggctccttgctag
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