Oryx dammah (scimitar-horned oryx): 120866940
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Entry
120866940 CDS
T07255
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120866940 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oda03041
]
120866940 (DDX42)
Enzymes [BR:
oda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120866940 (DDX42)
Spliceosome [BR:
oda03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120866940 (DDX42)
Complex B
120866940 (DDX42)
Complex C
U2 SnRNP specific factors
120866940 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120866940
NCBI-ProteinID:
XP_040100923
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGAASSASGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSPGNLSSAPVTY
PSAGAPGVNNNTAAGSNGREGTGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGG
RHGDGGRHGEGYRYPESSSRHADSRRHADGHPHGENRHGGGGGRHGESRGANDGRNGESR
KESCNRESKMDPKVDSPKVDKMDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccccggcactaagaggggctttggctttggcggcttcgcc
atcagtgctgggaagaaggaggagccgaagctcccgcagcagtcccatagtgcctttggg
gcagccagctctgcctctggctttggaaagtcggctccaccacaactcccttctttctac
aaaattggttctaaacgggccaacttcgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagcaacgttgatttaccttacattcctgctgagaactcacctacccgccag
caattccattccaagccagtagactctgatagtgacgatgatcccttagaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaatccaactgctggtgtggttcaagaggaggaggaagataat
ttagaatatgatagtgatggaaatccaattgcaccttccaaaaaaataattgatcctctt
cctcccattgaccattcagagattgactatccaccatttgagaaaaatttttacaatgaa
catgaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaac
cttcgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcctactccaatacag
tgccagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgctgcctttatctggcccatgttgattcatatcatggaccagaaagaa
ttggaaccaggtgatggaccgattgcagtgattgtgtgccccactagggagctctgccag
cagatccatgcagaatgtaagcggtttgggaaagcatacaatcttcgatcagtggcggtg
tatggaggagggagcatgtgggaacaagccaaggcccttcaggaaggggcagagattgtt
gtctgtacaccaggtcgactgattgatcatgtgaagaagaaagctaccaaccttcagaga
gtctcctaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagatcgaaaagctcgccagagacatcctgattgaccccattcgtgtggta
cagggagatattggagaggcaaatgaagatgtgactcagattgtggagattctccattct
ggacctagtaaatggaactggctcacccggcgtctagtggagtttacctcttcagggagt
gtcctcctgtttgttactaagaaagccaatgctgaagagctggccaataaccttaagcag
gagggtcataatcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggtt
atttccgactttaagaaaaaagacatccccgtcctagtggccacagacgttgcagcccgt
ggtctggacatcccttcaattaagactgtcattaactatgatgtggcacgagatattgac
acccatactcataggattggccgcacaggacgagcgggtgagaagggcgtggcctatacc
ttgctgacacccaaggacagcaattttgctggtgaccttgttcggaacttggaaggagcc
aatcagcatgtttccaaggagctcctagatctggccatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaggggaaaaagctgaacattggtggaggaggcctgggctac
cgggagcggcctggccttggctctgagaactcggaccgaggaagtaacaacaatgtaatg
agcaattatgaggcctacaagccctccacgggagccatgggagaccggctgacggcgatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccag
aaggctggaagctctgcggctggggcaagtggatggactagtgcagggagcttgaattca
gttccaactaattcagcccagcagggccacagcagtcccgacagccccattgccagcgcc
acaaagggtatcccaggctttggcagtcctgggaacctcagcagtgccccggtgacctac
ccttctgccggagctccaggggtcaacaacaacacagctgcagggagtaacggccgagaa
gggactgggggtggcaatgggaaaagagagcgatatactgagaaccggggcggaagtcgt
cacagtcatggagagagtggcaatcggcatggcgatagcccacggcacggagatgggggt
cgccatggagatgggggtcgccatggagagggataccgctacccagaaagcagcagccgt
cacgctgacagccgccgtcatgctgatggtcatcctcatggagagaacaggcatggaggg
ggcggaggccgacatggggagagccggggtgccaatgatggtcggaatggtgaaagcagg
aaggaaagttgtaatcgtgaaagcaagatggaccccaaggtggacagccccaaggtggac
aagatggacagcaagacagataagactcctgatggttttgctgtccctgagccgcccaag
cgcaagaaaagtcggtgggacagttag
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integrated database retrieval system
