Oryx dammah (scimitar-horned oryx): 120870530
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Entry
120870530 CDS
T07255
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03013
Nucleocytoplasmic transport
oda03015
mRNA surveillance pathway
oda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120870530 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
120870530 (DDX39B)
03015 mRNA surveillance pathway
120870530 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120870530 (DDX39B)
03041 Spliceosome [BR:
oda03041
]
120870530 (DDX39B)
Enzymes [BR:
oda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120870530 (DDX39B)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120870530 (DDX39B)
Spliceosome [BR:
oda03041
]
Complex C
Other components
EJC/TREX
120870530 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120870530 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120870530
NCBI-ProteinID:
XP_040106176
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagacg
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggcttccgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaagccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggctaccctgcaacaattggagccagttactggacaggtgtctgtactggtgatgtgt
cacactcgggagttggcgtttcaaatcagcaaggagtatgagcgcttctccaaatacatg
cccagcgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgtcgtggggacccctggccgcatcctagccctcgct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacggatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgctttt
aactacgacatgcctgaggattcagacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatataagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
DBGET
integrated database retrieval system
