Oryx dammah (scimitar-horned oryx): 120872696
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Entry
120872696 CDS
T07255
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120872696 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120872696 (EDC4)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120872696 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
120872696 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
120872696
NCBI-ProteinID:
XP_040109180
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAENQRPSNAYNGDLNGLLVPDPLCSGDSA
STNKPGLRAMPPINLQEKQVICLLGDDSSTGIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALINGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRTNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSPVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESSAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPSHP
AHEDFAFPTAFGESRPELGSEGLGSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSASLQQISASPSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPTLPRPPEELTLSP
KLQLDGGLTMSSSSLQASPRGLLPGLLPGPAEKLTPKGPGQVPTAASALALELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEGLEPDSMASAASALHL
LSPRPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETC
SSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGNFGSK
VPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSLGSRLTEHQVAETPEDWPALIWQQQ
RELAQLRHSQEELLQRLCAQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
SSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
DSFRLGTQEYLQQLENHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSGSVRA
EVQHQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKAARRLSLMLHGLMTPSLP
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggccggcgggaggccccagtgcagagaaccagcgaccatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaggtgacagtgct
tcaacaaacaagcctggtctccgagccatgccacctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccactggcattggaattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
attcaacctgtcgccaagtatgactgggagcagaaatactactatggcaacttgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcaatggtg
cgagtgatcagtgtcagcacttcagagcggaccctgctcaaaggcttcacaggcagcgtg
gctgatctggcctttgcacatctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtatggcgcttggccttgattaatggcaaaattcaagaggaaatcttggtc
cacatccgccagccagagggcactccactgaaccacttccgcaggatcatctggtgcccc
ttcatccccgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaagtgtgggacctggacatgctccgcaccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ttgagtgaaggggccctctcacctgatgggactgtcctggctaccgcaagtcacgatggc
ttcgtcaagttctggcagatctacattgagggacaggatgagccacggtgtttacatgag
tggaagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccccttctggagattcctcattactggcgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagcccagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcagaa
tacctgatcctcagtgatgtacagcggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggccgggcctgcttcagctcgatctctgagttccttctcacccaccctgta
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacacagaggtgctgcct
gccgaggaggagaatgacagcctcggggccgacgggacccacggagcaggtgcaatggag
tcttcagccggtgtgctcatcaagctcttttgcgtgcacactaaggcattacaggatgtc
cagatccgctttcagccacagctgaaccctgacgttgtggccccactcccctcacaccct
gcccatgaagactttgccttccccacagcatttggagagtctcggccggagctgggctca
gagggcctgggatcggctgctcacggctcccagcctgacctccgacgtatcgtggaattg
cctgcaccagctgacttcctcagtctgagcagtgagaccaagcccaagctgatgacacct
gacgccttcatgacgcctagcgcctccctgcagcagatctctgcatctcccagtagcagc
agcagcagcagcagtagcagcagcagcagctcctctctcacagccgtgtctgctatgagc
agtacttcagccgtggaccccaccttgcccaggccacctgaggagctgaccttgagcccc
aagctacagctggatggcgggctgaccatgagcagcagcagcctgcaggcaagcccacgt
gggctcctgcctggcctgctcccaggtccggccgaaaaactgactcccaaaggacctggt
caggtgcctactgctgcctctgcactcgccctggagctgcaagaagtggaacccctgggg
ctgcctcaggcttcccccagccgcacccgctcccctgatgttatctcttcagcctccact
gccttgtcccaggacatccctgagatcgcatctgaggcgctgtcccgtggctttggcgcc
tccgctcctgagggcctggagccagacagcatggcctcagcggcctcggcgctccacctc
ttgtctccacggccccggccagggcccgagctcggcccccagcttagcctggatgggggc
cctggggatggggatcggcatagtaccccttccctcttggaggcagccttgacccaggag
gccacggcccctgacagtcaggtctggcctacagctccagacatcactcgtgagacctgc
agcagcctggcagagagcccccggaatggcctccaggaaaagcacaagagcctggctttc
caccgaccaccttatcacttgctgcagcaacatgacagccaggatgccagtgcggagcaa
agtgaccatgatgatgaggtggccagcctcgcctctgctgcagggaactttggctccaaa
gtgcccactccacgtcttccagccaaggactggaagaccaagggatcccctcgggcctca
cccaagctcaagagaaagggcaaaaaggatgacggggattcatccttgggatcccggctc
acagagcaccaggtggcagaaacccctgaggactggccggcactgatctggcagcagcag
agagagctggcacagctgcggcacagccaagaagagctgctgcagcgcctgtgcgcccag
cttgaaggcctgcagagcactgtcactggccacgtggagcgagccctggagtcaaggcac
gagcaggagcagcggcgactggagcgggccctggctgaggggcagcagcgaggtgggcag
ctgcaggagcagctgacgcagcagctatcccaggcgctgtcttcagcggtggcagggcgg
ctggagcgcagcatacgagacgagatcaagaagacggttcctccatgtgtctcccggagt
ctggagcctgtggctggccagctcagcaactcggtggccaccaaactcacagctgtggag
agtagcatgaaagagaacatctctaagctgctcaagtccaagaacttgacagatgccatt
gcccgagcagccgcagacacattacaggggccaatgcaggccgcctaccgggaagccttc
cagagtgtggtcctgcccgccttcgagaagagctgccaggccatgttccagcagatcaat
gacagcttccgactgggcacacaggagtacttgcagcagttggagaaccacatgaagagc
cgcaaggcacgagagcaggaggcacgggagcccgtgctggcccagctgcggggcctggtc
agcaccctgcagggggccacggagcagatggcggccactgtgtccggcagcgttcgggct
gaggtgcagcaccagctgcacgtggctgtgggcagcctgcaggaggcgattctagcccag
gtacagcgcatcgtgaagggcgaagtgagtgtggctctcaaggagcagcaggccgccgtc
acctctagcatcatgcaggccatgcgctcggctgccggcacccctgtccccgctgcccac
ctcgactgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaat
caggccttccagcaggctctgacagctgccgacctgaacctggtgctatacgtgtgtgaa
acagtggacccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactc
ctttctctcatccagcaactggcctctgatcttggcactcgaactgacctcaagctcagc
tacctggaagaggctgtaatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctccgtcatggctcaggtgcgccagaagctcttccagttcctgcaggcggagccacac
aactcacttggcaaagcagcccggcgtctcagcctcatgctgcacggccttatgaccccc
agcctcccttag
DBGET
integrated database retrieval system
