Oryx dammah (scimitar-horned oryx): 120874254
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Entry
120874254 CDS
T07255
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120874254 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oda03021
]
120874254 (PCF11)
03019 Messenger RNA biogenesis [BR:
oda03019
]
120874254 (PCF11)
Transcription machinery [BR:
oda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120874254 (PCF11)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120874254 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
120874254
NCBI-ProteinID:
XP_040111519
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQ
QETSSLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIPDTKGTNRDPRLNR
MSQHSSHGKDQSHRKEFLMNTLTQSDIKTSKTVPSEKLNSSKQEKSKSSEKITKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKDDDIK
DKRKTAEKKEKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSREE
RSAKRSTKQDVRDPRRIKKTEEERPQETAGQHSTKSGTEPKENVENWPSSKSTKRWKSGW
EENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKPQHRLSVDANLQIPKELTVASKR
ELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNS
GAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSSKGVREEQRSPFNDRF
PLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPAKMIFE
GPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTP
LRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRF
EGPHGQPVGGLRFENPRGQPVGGLRFEGGHGPSGAAMRFDGPHGQPSGGIRFEGPLLQQG
VGMRFEGPHGQSVGGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGP
SVPGGGLRIEGPLGQGGPRFEGCHALRFEGQPGQSSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFEGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQT
GPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDE
KNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVSQPVAFGQGQQFLPVHPQNPGAFVQNP
SGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPSESPKVKEEQIDTPPACTEESIATATEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcacttgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatatttcctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaagtttttaaataaatcgcctgaagaatcttcaacacctggcacagtggtc
agttcccctagcatctccactcctcctattccggatatacaaaagaatcttactcaagag
caactaataaggcagcagttactggcaaaacaaaagcagctgttagaacttcagcagaaa
aagctggagcttgaacttgagcaagctaaggcacaactggcagtttctcttagtgttcag
caggagacatccagcttaggtcctggatctgcaccatccaaattacatgtttcacagatt
ccccctatggcagttaaagctcctcatcaggttcctgtgcagcctgagaaaagtcgtcca
ggtccatccttacaaattccagatacaaaaggaactaaccgggatccccgtcttaatagg
atgagtcaacattcttctcatggaaaagatcaaagtcacaggaaagaattcctaatgaac
acactgacccaatctgatattaagacaagtaaaactgtaccctctgaaaaactaaattca
tccaagcaagaaaaaagtaaatcaagtgaaaaaataaccaagaaagaacttgaccaattg
gattctaaatccaaatctaaatctaaatcaccgtcacctttgaaaaataaattatcccac
acaaaagacttgaaaaatcaagaatctgaaagtacaagggtgtctgatatgagcaagaga
gatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgatataaag
gacaagagaaaaactgcagaaaaaaaggagaaagatgagcacatgaaatcatctgaacac
agactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacaata
acggaagaatcggaaaagcaggggacaaaaccagggagatcgagtactagaaagcgatca
agatcacgatcacccaagtctcggtcaccaattatacattctcccaagagaagggacagg
cggtcacccaaacgaaggcaaaggagtatgtctccaacgtcaacccccaaagctgggaag
attcgccagtcaggagttaaacagtcacacatggaagagtttacaccttccagggaagaa
agaagtgcaaagagaagtactaaacaggatgttcgagatccaaggcggataaaaaagact
gaagaggaacgaccacaagagactgcaggtcaacattctaccaagtcaggcactgaacca
aaggagaatgtagaaaattggccaagttccaagtctaccaaaagatggaaatccggttgg
gaagaaaataaaagtttacaacagggtgatgaacatagtaaagctcctcatctaaggcat
agggagagctggtcaagcactaaaggaattttgtcacctcgagccccaaagccgcagcat
cgattaagtgtagatgccaatcttcagattcctaaagagttaactgtggcaagcaaaaga
gaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgagttc
cttgttgttgtgcatcaaatacgacagctatttcagtatcaagaaggtaaacatagatgc
agtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctctta
tctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcag
cattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgactgat
gccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagt
ggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctata
tctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacatgac
gagcaagtctcttctaaaggtgtacgagaagagcagagatcaccattcaatgatcgtttt
ccacttaaacgacctagatatgaagattcagataaaccatttgtagatagccctgcgtca
agattcgccggccttgatacaaatcagcgacttacggctttagctgaagatagaccgtta
tacgatggacctagcaggccatcagtagcgagagatggcccagccaagatgatttttgaa
ggacctaataaattaagccctagaattgatggacctcctacaccgggttctcttcggttt
gatgggtcaccaggacagatggggggaggtggccctttgagatttgaaggaccacaaggc
cagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagttgggacaccg
ctgcgatttgaggggccgattggtcaagcaggaggtggtggcttccgatttgaaggttcc
cctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccagggggccag
cctgtgggtggtctcagatttgaaggacatcggggtcaacctgtgggtggtctgaggttt
gagggacctcatggtcagcctgtgggtggacttcgatttgagaatcctcgaggtcagcca
gtaggtggacttagatttgagggaggtcatggtccatcaggagctgcaatgagatttgat
ggacctcatggtcagccatcaggtgggatcagatttgagggcccattgttacagcaggga
gttggaatgaggtttgagggcccccatggtcagtcagtaggtggtatgaggtttgaagga
caacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccaggggtt
gggatcaggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgagggtcct
tcggtcccaggaggtggcctgagaatcgaaggacctctgggtcaaggtggtccgaggttt
gaaggttgtcatgctttaaggtttgaagggcagccaggtcagtcatcactcctgccaaga
tttgatggattgcacggtcagccaggtcctagatttgaaagaactggtcagccaggcccg
cagaggtttgatggacctcctggacagcaggttcaaccaagatttgatggtgtgcctcag
agatttgaaggcccacaacaccagcaagcatcaaggtttgatattcctcttggtcttcaa
ggcacacgatttgacaatcatccttcacagaggcttgagtcagtatctttcaatcagact
ggcccatataatgatccacctggcaatgcttttaatgccccatcccaaggactacagttc
caaagacacgaacaaatgtttgactcacctcaaggaccaaatttcaatggaccacatggc
cctggaaaccagagtttttccaatccccttaacagagcttctggacactattttgatgag
aagaatcttcagagttctcaatttggaaactttggcaatttacctgctccaataacagta
ggaaatattcaggcatctcaacaggttctgactggtgtttctcagccagtagcatttggc
caaggacagcaatttttgccagttcatccacaaaatcctggagcatttgttcagaatcct
tcaggagccctgcctaaggcttatcctgataatcatctcagtcaggtggatgtaaatgaa
ttattttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattcagctaca
acacaagtaaatgaagttgctgctcagccccctgctgaggaggaggaagatcaaaatgaa
gatcaagatgttccagatcttaccaattttacaattgaagaattaaaacaacgctatgat
agtgttataaatcgactgtacactggtattcagtgttattcctgtggaatgaggtttaca
acatcacagacagatgtatacgcagatcacttggactggcattatcgacaaaatagaact
gaaaaagatgtaagcagaaaagtcactcataggcgttggtactacagtttaacagactgg
atagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaaaag
gtacatgaagaagttgtactcaaaactcaggaggctgctaaagaaaaggagttccagagt
gtaccagctggcccagcaggagcagtcgagagttgtgaaatctgtcaagagcaatttgaa
cagtactgggatgaagaggaggaggaatggcatttaaaaaatgctattagagtagatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaatcccttgaacattatgttgaacattgtcaaa
aacgaattgcaggaaccctctgaaagtcccaaagttaaggaagaacaaattgatactcca
ccagcttgcacagaggaaagcatagcaacagccactgaaattaaaacagaaaatgataca
gtcgagtcagtttga
DBGET
integrated database retrieval system
