Oryx dammah (scimitar-horned oryx): 120876141
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Entry
120876141 CDS
T07255
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03440
Homologous recombination
oda03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120876141 (PALB2)
03460 Fanconi anemia pathway
120876141 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oda03400
]
120876141 (PALB2)
DNA repair and recombination proteins [BR:
oda03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120876141 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
120876141 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
120876141
NCBI-ProteinID:
XP_040113769
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MEEPPGKTLSCEEKEKLKEKLAFLKREYTKTLARLQRAQRAEKFKNSLRRTVEEQDSSLQ
QEVSTQLTHTEPKNTASPHDTLQISTHVDEETGEKTASSLDIEPVSFSSGRVSVEGSRAQ
GSDDNQQHFPFRVSRPDAKKRQRKLLGRRKKEERTYISQEREPLSDTDALILSGKRLKKQ
EKINRENLRTPVTELRTYPLSSPECAIPNSPASVTETNVGSVLILPSTKPQSDVDAFLRG
NDFPRATTLPLPTPSDSSSGQLLERKRPQSNCELNTHSLRNISSASPVNLEVQKKKMTVS
TDNPEVNRAGSTSGQAARRPNLEADNSCFINELSCDNLVENENQNLKEQNHTEMSLKSPN
DALGGRNESLLEKEVLSQSKNLSLGVISPVSTEDQIHSCTMLEGLLFPAEYYVRTTRHMS
SCQRKVALEAVIQSHLGVRKKGFQNKSTKSAKKVNLCNEKTKQTEIKVSDTHAEQPSSGS
PQKLLSLTEVSFSTDSTEDDFSRKTVTKPSGKKCRGKRKSACTSPLDHHELLLPTSGTSG
VKKSKEEIALHKDQNEKAIIHSKKRVKGKEGHCQKEDSLSYSNYAYFSLDDDAFSTPSHK
NKMLSLKHLSSFLKITDFQLPDEDFGFLKLEKLKSCSEKLMEPFGSKVRGEGHLKGESYI
VVEEPSPKQSNIAKEGMEEELITLPGKAHSRKPSQRSQPRGKDLSSSILLFTPLNSVASD
DSDRLTADLCSPAFPILGATPAFGSQAHKEKVSAEASGQTCSPPHLSHLKATVSLPSSRK
QCNSWSSPPRLDGSQHVAGRAGQPSCDPDSGPQATTLPTESFTYAASQLQGSQRPSAEQT
EIAEVPAWDSLNPGTLQLVSKLKNPSGSCSVDVSATWWEIAGFKEPCIVTACEYVVSLWK
PLDAWQWEKIYSWHFTEVPVLQIVAVPDVCNLVCVALGNLEIREIRALLCSPDGKSEKQV
LLSSGNIKAVLGLPKRRLVSSSGTLCDQQVEIMTFAEDGGSKEKQLLMPPEETILTFAEV
QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHINDSYQASVCHKAYSEMGLLFVVLSHPCA
KENELLGSPVFQLIVINPKTALSMGVMLYCLPHGHAGRFLEGDVKDHFAAAILTSGTIAV
WDLLLGHCTALLPPVSGQNWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcctgggaagaccctcagctgtgaagagaaggaaaagttgaaagaaaaa
ttagcattcctgaaaagggaatacaccaagacattggcccgccttcaacgtgcccaaaga
gccgagaagtttaaaaattctcttaggagaacagtggaagaacaagattcctcactccag
caggaagtttcaacccagctaacccacacagaacctaaaaatacagcatctcctcatgac
acgttgcagatcagtacccatgtcgatgaagaaactggagaaaagacagccagctcactt
gacattgagcctgtgtcgtttagctctggacgcgtctcagtggaaggatcacgcgcacaa
ggatcagatgataatcagcaacatttccctttcagggtcagtcgccctgatgctaagaaa
aggcagagaaagctgctggggagaagaaagaaagaggagagaacatacatttcacaggag
agagaacctctctctgatactgatgcactcatactctctggaaaaagactaaagaaacag
gaaaaaatcaatagagaaaatcttagaacacctgtaaccgaactaagaacttaccccctt
tcaagtcctgagtgtgccattccaaattctccagcatcagttacagaaactaatgtaggg
agtgtattaattctaccaagcaccaaaccacagagcgatgttgatgccttccttagagga
aatgatttccccagggcaactactcttcctctgcctacgccatcagacagtagtagcggt
cagctcctcgaacgcaagcgtcctcaaagtaactgcgaacttaatacccacagcttaaga
aacattagctctgcttcacctgtaaacttagaggtacagaagaaaaaaatgactgtctct
acagataacccagaggtaaacagagctggaagtacaagtggccaggcagctagacgtcct
aacttagaggcagataattcgtgttttataaatgagctcagttgtgataacttagtggaa
aatgaaaaccaaaacttaaaagaacaaaatcacacagagatgtctcttaaatctcccaat
gatgctctcggtggtagaaatgaaagtcttctagaaaaagaagttttaagtcagtctaag
aatcttagcctgggagtaatttctcctgtttctacagaagatcaaatacattcttgcaca
atgcttgaaggccttctctttcctgcagaatattacgttaggacaacacggcatatgtca
agctgccagaggaaagtagcactggaggctgtaattcagagtcatttaggtgtcaggaaa
aaaggctttcaaaataagagtacaaaatctgctaaaaaagttaacctttgcaacgaaaaa
actaagcaaactgaaattaaggtgtctgacacacacgcagaacaaccaagttcaggaagt
cctcagaaacttctctcattaactgaagtcagcttttccactgactccacagaagatgac
ttttctaggaagacagttaccaagccatcaggtaaaaaatgcagaggaaaaagaaaatca
gcgtgcacatctccgttagatcaccatgaactacttttgccaacttctggcacatcaggt
gttaagaagtccaaggaagaaattgccttgcacaaagatcagaatgaaaaggcaattatt
cacagtaagaagagagttaaagggaaggaaggtcattgtcaaaaagaggactccctttcg
tacagtaattacgcttatttctctttggatgatgatgctttcagcactccatctcataag
aacaaaatgctaagtttaaagcatctgtcatcttttctcaaaatcacagactttcagtta
cctgacgaagactttgggtttcttaagcttgaaaaactgaagtcctgctcagaaaagctg
atggagccttttggatcaaaagtacgtggagaggggcatcttaaaggggaaagttacatt
gttgtggaggaaccaagccctaaacaaagcaatatagcaaaggagggcatggaagaggaa
ttaattactctaccaggaaaggcacattctagaaagccaagccaaagaagccagcctcgg
ggaaaggacctttcttcgtccattttacttttcactcctttgaattctgttgcctctgat
gatagtgacagactgactgcagacctgtgctcacctgctttccccatattaggcgctact
ccagcttttggctcccaagcccacaaggaaaaggtgtctgcagaggcgagtggacaaacc
tgctcgccaccccatctttctcacttaaaagccacagtcagcctgcctagcagtcgtaaa
cagtgcaacagctggagcagccccccaagattagatggcagccagcatgtggcaggaaga
gcaggccaaccttcctgcgaccctgactctggtccccaagcaacaactctgcccactgag
tctttcacctacgcagcaagtcagctccagggatcacagagaccttctgctgagcagact
gaaatagcagaggttcctgcttgggatagcttaaacccgggcaccctacagctggtttca
aagttaaagaatccttcaggttcttgttctgtggatgtgagtgccacgtggtgggaaata
gctggtttcaaagagccgtgtatcgtaactgcttgtgaatacgtcgtttctctttggaaa
cctctggatgcttggcagtgggaaaaaatttattcctggcactttacagaggttccggta
ttacagatagttgcagtgcctgatgtttgcaatcttgtgtgtgtggctttgggaaatttg
gaaatcagagaaatcagggcactactttgttctcccgatggtaaaagtgaaaagcaagtg
ctcctgagttctggaaatataaaagctgtgcttggcctgccaaagaggaggcttgtcagt
agcagtgggaccctttgtgatcagcaagtcgaaattatgacatttgccgaagatggagga
agcaaagaaaaacagcttttgatgccccctgaagagaccatactaacttttgctgaggtt
caagggatgcaggaagctctgcttggtaccactataatgaacaacattgttatttggaac
ttaaaaactggtcagctcctgaaaaagatgcacatcaatgattcctaccaagcttcagtc
tgtcacaaagcttactctgaaatggggctcctgtttgttgttctgagtcacccttgcgcc
aaagagaacgagttattgggaagccctgtgtttcagctgattgtgattaacccgaagaca
gccctgagtatgggtgtgatgctctactgccttcctcacgggcacgctggaaggttcctg
gaaggcgacgtgaaagaccatttcgcagcagcaatattgacttctggaaccattgccgtt
tgggacttactcttgggtcactgcactgctctccttcctcctgtctctggccagaattgg
tcttttgttaaatggtcaggtacagattctcatttgttggctggacaaaaagatggaaat
atatttgtataccgctactaa
DBGET
integrated database retrieval system
