Oryx dammah (scimitar-horned oryx): 120877125
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Entry
120877125 CDS
T07255
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120877125 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120877125 (PATL1)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120877125 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
120877125 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120877125
NCBI-ProteinID:
XP_040115386
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MSGKLGGRKNAICTESYNEAIVLIGKSLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGS
GAVDDDWQEAHERLAELEEKPPAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENEL
EDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPP
QGPEDDRDLSERALPRRSTSPVIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPP
MPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSP
SQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPPATPPPPQQHAPGPGP
HLQSLRSQTPMFRPDTTHLHPQHRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHIRK
DPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEVHGDGPRKER
TKLITPQVARLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDK
RRKTLFIIEKTYSLLLDVEDYERRYLLSLEEERPALMDERKHRICCMYDNLRGKLPGQES
PSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLLCLLS
PFSLLLYHLPPVTVTSLLQQLMNLPQSAAAAAPSNPHLSAVLQNKFGLSLLLLVLSRGED
LQSSDAASESAQSNPWTEVMFVATRELLRIPQTGLAKPISIPTNLVSLFSRYVDRQKLNL
LETKLQLVQGIR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaaattggggggtagaaaaaatgccatctgtacagaaagttataatgaagct
attgtgttgattggtaagtctttggaggattgtcctctggatgaagatgaagatgcattt
cagggcctgggagaggaggatgaagagattgatcaattcaatgatgatacatttgggtca
ggtgcagttgatgatgactggcaggaagcacatgagcgcctggctgagctggaggagaag
ccgcctgcagcagttaatgaacaaacaggcaatggagaaagggatgagatggacttgttg
ggtgaccatgaggagaatctggcagagaggctcagtaagatggtgattgaaaatgaactt
gaagacccagctatcatgagggcggtacagaccaggccagtgttgcagccccagccagga
agtctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggacccctg
cttgctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccc
cagggcccagaagacgatcgggacctttccgagcgcgcattaccaaggcggtccacctcg
cctgtcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagatg
gctgtgcccagcttcaaccagcagattctgtgtccaaagcctgtccatgttcggccccca
atgccaccacggtatcctgctccctatggtgagaggatgtctccaaaccagctctgcagt
gtcccgaactcctccctgctgggccacccttttccccctagcgtccctcctgtcctcagc
cccctccagagagcacagcttcttggaggagcacagctacagcctggacggatgtctccc
agccagtttgcacgggtccctggattcgtgggcagcccacttgccgccatgaaccccaag
ctgttgcaagggcgagttgggcagatgctcccccctgcgccaggcttccgcgccttcttc
agcgccccaccccccgctacaccaccacctccgcagcagcacgcccctggcccaggaccc
cacctgcaaagtctaagatcgcagaccccaatgtttagacccgacacaacccatcttcat
ccacagcaccgtcggctcttgcatcagaggcagcaacagaatagaaatcagcatcggaat
ctcaacggtgcaggagacagagggagtcaccggagcagtcatcaggatcatatccggaag
gacccgtatgccaacctcatgctgcagcgagagaaggactgggtctctaaaattcaaatg
atgcaactgcagagcactgacccctacctggacgacttctactaccagaattactttgaa
aaactggagaagctgtcagctgctgaagaagtgcacggtgacggcccaagaaaggaacgc
accaagctcatcacgccccaggtggccaggctggagcacacctacaagccagtgcagttt
gagggctctttgggaaagctcactgtctctagtgtgaataatccccgaaaaatgattgat
gctgttgtgacatctcggagtgaggatgatgagacaaaagaaaaacaagttcgggacaaa
agacgaaaaacccttttcataattgagaagacctacagtttactgcttgatgtggaggat
tacgaaaggcgttacctcctaagtctggaagaagagcgacctgctctgatggatgaaaga
aagcacagaatttgttgcatgtatgacaacttaagggggaaattgcctggacaggagagc
ccaagtgacgaccactttgtgcagatcatgtgcatccgaaaggggaagagaatggtggcc
cggatcctgcctttcctctccacagagcaagcagccgacattctcatgacaacagccagg
aacctccccttcctcatcaagaaggacgcacaggatgaggtgctgctgtgcctgttgagt
cccttctctctcctcctctaccatcttccaccagtgaccgtcaccagccttctgcagcag
ctgatgaacctacctcagagcgcagcggccgcagctccgtccaacccgcacctctccgcc
gtgctccagaacaagtttggcctgtccctgctcctcctcgtcctgagccgcggggaagac
ctacagagctcagatgccgcttcagaatcggcgcaaagcaacccgtggacggaggtgatg
ttcgtggcaacccgagaacttctgcggattccccagacaggcctggccaagccaatctct
atacccacaaacctagtatccctcttttctcgttacgttgaccgacagaagctgaacttg
ctggagacaaaactgcagctagtgcaggggatacggtaa
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