Oryx dammah (scimitar-horned oryx): 120879022
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Entry
120879022 CDS
T07255
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oda04121
]
120879022 (TRIM56)
Enzymes [BR:
oda01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120879022 (TRIM56)
Ubiquitin system [BR:
oda04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120879022 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_4
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
120879022
NCBI-ProteinID:
XP_040117965
LinkDB
All DBs
Position
Unknown
AA seq
754 aa
AA seq
DB search
MVSQGSSPSLLEALSSDFLACKICLEQLQVPKTLPCLHTYCQDCLAQLAEGGRLRCPECR
ESVPLPPAGVAAFKTNFFVNGLLDLVKARAGGDLRAGKPACALCPLMGGASAGGPATARC
LDCADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL
CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEELLAGVDNNLAELEATRLAEKEA
LARLREQASKVVTQVEEAAERVLRALLAQKQEVLGQLRAHVEAAEEAARERLGELEGREQ
VAREAAAFARRVLSLGREAEILSLEGAIAQRLRQLQGCPWVPGPAPCQLPQLELHPGLLD
KNCHLLRLSFEEQQPQDSEKDGAQSQGGDATQPQSRDGVQTPNQDRAQTPQEDEAQPLKA
ERAETPEEDGAKTPKEGRAQTPQEDGGTQARGGGRSNKKRKFKGRLKSISREPSPAPGPN
LEGSGLLPRPIFFCTFPTRMPGDKRAPRITGLCPFGSREILVADEQNRALKRFSLNGDYR
GAVPVPEGCSPCSVAALQDAVAFSAAARLYLINHNGEVQWRRALSLCQASHAVAAMPSGD
RVAVSVSGHVEVYNMEGSLATRFIPGGKANRGLRALVFLTTSPQGHFVGSDWQQNSLVVC
DGLGQVVGEYRGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHG
LEKPRVTTMVDGRYLVVSLSNGTIHVFRVRPLDS
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccagggctcctcaccatccctcctggaggccctgagcagtgacttcctggcc
tgtaaaatctgcctggagcagctgcaggtgcccaaaacgctgccctgcctgcacacctac
tgccaggactgcctggcacagctggccgagggtggccgcctccgatgcccggagtgccgc
gagtctgtgcccctgccgcccgcgggcgtggccgccttcaagaccaacttctttgtcaac
ggactcctggatttggtgaaggcccgggctggtggcgacctgcgagcagggaagccggcc
tgtgccctgtgccccctgatggggggcgccagtgccggggggccagccaccgcccgctgc
ctagactgtgccgatgacctgtgccaggcctgtgccgacggacaccggtgcacccgacag
acccacagccatcgggtggtggacctggtgggctatagggccgggtggtacgatgaggag
gcccgggagcgccaggcggcccagtgtccccagcacccgggggaggccctgcgcttcctg
tgccagccatgctcccagctgctgtgccgagagtgtcgcctggacccccacctggaccac
ccctgcctgcccctggctgaggctgtgcgtgcccggaggcccggcctcgaggagctgctg
gccggcgtggacaacaacctggccgagctggaggccacccggctggccgaaaaggaagcc
ttggcccggctgcgggagcaggcgtccaaggtggtcacgcaggtggaggaggcggccgag
cgagtcctcagggccctcctggcccagaagcaggaggtgctcgggcaactgcgggcccac
gtggaggctgccgaggaggctgctcgggagcgcctgggggagctggagggccgggagcaa
gtggccagggaggcggccgcctttgcccgtcgggtgcttagcctggggcgcgaggctgag
atcctctcgctggagggggcgatcgcccagcggctccggcagctgcagggctgtccctgg
gtgcctgggcccgctccctgccagctgccccagctggaactgcatcccgggctcctggac
aagaactgccacctgctgaggctctcctttgaggagcagcagccacaggacagcgagaag
gatggagcccaaagccagggaggtgatgcaacccagccccagagcagggatggagttcag
accccaaatcaggacagagcgcagacaccccaagaggacgaagcccagcccctcaaggca
gagagagccgagactcccgaggaagatggagccaagaccccgaaagagggcagagcccag
acaccccaggaagatggaggaacccaggcccgggggggcggcaggtccaacaagaagagg
aagttcaaaggcaggcttaagtccatctcccgggagcccagccctgcccccgggccaaac
ctggagggctccggcctcctccccaggcccatctttttctgcaccttccccacccggatg
cctggggacaagcgcgcccctcggatcactgggctctgtccctttggctcccgggagatc
ctggtggcggatgagcagaacagggccctaaagcgcttctctctcaatggcgactacagg
ggcgcggtgcctgtgcctgagggctgctccccatgcagtgtggccgccctgcaggacgcc
gtggcattctcagcggccgcgcggctctatctcatcaaccacaacggcgaggtgcagtgg
cgccgggcgctgagcctctgccaggccagccacgctgtggccgccatgccgagcggggac
cgggtggcggtcagcgtgtccggacacgtggaggtgtacaacatggaaggcagcttggcc
acgcggttcatccctgggggcaaggccaaccggggcctgcgggcgctggtgttcctgacc
accagcccccagggccattttgtagggtccgattggcagcagaatagcttggtggtctgt
gatgggctgggtcaggtggttggggaataccggggacccggtctgcatggctgccagccg
ggctccgtgtccgtggataagaaaggctacatctttctgacccttcgtgaggtcaacaag
gtggtgatccttgatccgaagggctcgctgcttggcgactttctgacggcctatcacggc
ctggaaaagccccgggtgaccaccatggtggacggcaggtacctggtcgtgtccctcagt
aacgggaccatccatgtctttcgggttcgccctcttgacagttaa
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integrated database retrieval system
