Oryx dammah (scimitar-horned oryx): 120879518
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Entry
120879518 CDS
T07255
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120879518 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oda03019
]
120879518 (MTREX)
03041 Spliceosome [BR:
oda03041
]
120879518 (MTREX)
03009 Ribosome biogenesis [BR:
oda03009
]
120879518 (MTREX)
03016 Transfer RNA biogenesis [BR:
oda03016
]
120879518 (MTREX)
Enzymes [BR:
oda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120879518 (MTREX)
Messenger RNA biogenesis [BR:
oda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120879518 (MTREX)
Spliceosome [BR:
oda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120879518 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120879518 (MTREX)
Ribosome biogenesis [BR:
oda03009
]
Eukaryotic type
Pre-60S particles
Helicases
120879518 (MTREX)
Transfer RNA biogenesis [BR:
oda03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120879518 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120879518
NCBI-ProteinID:
XP_040118469
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGSAEKTGKCFDGKLQSESTNVG
KNKRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaggaaaaggagaaggggaaatggaagggtccgccagggtct
gcagaaaagaccggaaaatgttttgatggtaaattacaatcagagtcaactaatgttgga
aaaaacaagagagatgcagacttcgagggtgctgatgaacctatttttggaaaaaaaccc
agggtggaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaaa
gtacagtcggttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattctt
gatgcttttcagagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtttgtgctgaatatgccattgcattggcgctaagg
gaaaaacaacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgtcggtctgatgactggagatgttactattaatcct
acagcatcctgtcttgttatgaccacagagattttgaggagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgataacgttcactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattacagcactatatt
tttccagccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcgaaaaggaggaacaaaaggtccatcaaacgtattcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttatgcacttcagatgaccaaattagatttcaacacagatgaggaaaagaagatggtt
gaagaagtttttagtaatgcaattgactgcttgtctgatgaagacaaaaagctccctcag
gttgaaaatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttactg
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttgtttacaaat
gcccgaaaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgagtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcggaagaacagtataataaaatagtaataccaaatgaa
gaaagtgttgtcatctactacaagattagacagcagcttgccaaattgggtaaagaaatt
gaagaatacattcacaaaccaaaatattgcttaccctttctgcagccaggtcgtttggta
aaggtgaagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaa
tccaatgttaagcctaattctggtgaactggatccgttatatgtagtagaagtacttctg
cgttgtagcaaagagagcttgaaaaattcggctactgaggctgcaaagccagctaagtct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttagactttacatccccaaagaccttcgaccactggacaacagacagagtgttcta
aaatcaatacaggaagttcagaaacgttttccagatggtgttcccttattagaccctatt
gatgacatgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggccttt
gagcatcgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggcctcttcaatgacctg
tctgcagaacaagcaacagcactactgagctgctttgtgtttcaggagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaagttggaaattgatgaggagacttatctaagc
tcatttaaacctcacttaatggatgtagtatacacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgccagcctc
tacttataa
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