Oryx dammah (scimitar-horned oryx): 120881209
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Entry
120881209 CDS
T07255
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
oda
Oryx dammah (scimitar-horned oryx)
Pathway
oda04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oda00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
120881209 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oda04147
]
120881209 (COL18A1)
00535 Proteoglycans [BR:
oda00535
]
120881209 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
oda00536
]
120881209 (COL18A1)
Exosome [BR:
oda04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120881209 (COL18A1)
Proteoglycans [BR:
oda00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120881209 (COL18A1)
Glycosaminoglycan binding proteins [BR:
oda00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120881209 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120881209
NCBI-ProteinID:
XP_040120816
LinkDB
All DBs
Position
Unknown
AA seq
1796 aa
AA seq
DB search
MAPDPSSRRGHHSLLLLACCLSAAQAQLLSWLWSGNSAWPTAAPASKPPDISPVWPTEDT
TTHVAPRDASTDWWKVPASPTAPLGRPEAGQGQTPAGPTASTSSPDLREENIAGVGAKIL
NVAQGIRSFVQLWDDAKGTTPAESSAGTGMLAPATPTDPLSTAPAEGSTRAEMPPPTDTT
DTLSTPGPSSIPQDSGTTLQLSTKALSSSDTQMTEASTLPVPTQPPPSPGRPWFRESLVP
PTPGRFSLSSVLARAPPWGSQLPLGRPLQLDGEGLLLAAARPGQQHADDHRPTPPLPPLV
TGSLGRHTALWALSSDPPAKLSHVAVSALTVDSGAWAPHVADSVGPGLANKSTLLGAAEL
AATGQPVPTTAGRCLPLPPSLALCGNLGIRRSWWPNHLRHASREEVQAEVPAWGALLRTH
CHRFLAWFFCLLLAPPCGPGLPPGPPPCRQFCEALEDACWSHLDGRGLPLPCASLPPRED
GHCVFIGPPADGEVMEVGLQQLLGEPPPWQVAVVHDPAVGPAYEFGEDGSGGGQAARSLL
PGSFFQDFSLLVRVRPASARAGVLFAVTDPAQAVVSVGVKLTAARGGRQHVQLLYTDPGA
TDTRTAASFELPALDGRWTRLALSVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLF
VAQAGGADPEKFQGLISELRLRRDPRVSPRQCQDEDEDDDDDGVSGDLGSGLMETQEHPR
EELGAPLGPRLPEAPPVTSPPLAGVGTEEDLRTEEVEESTTVSSLGAQTLPSLGTVGTWD
ENVWSPGSSVKEQGLKGQKGEPGAQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPPG
PPGPPGKDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGP
QGPPGPPGPSFKPDRLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGM
NSSDVPGPAGLPGVPGRDGLPGLPGPPGPPGTPGRDGQPGLTGQKGSLGEAGAPGPKGSK
GDPGPIGAPGEQGLAGDPGPAGPPGPPGPPGPPGPGFAAGFDDMEGSGSPFWSTARGADG
LQGPPGTPGVKGDPGAVGPPGSKGEVGADGAPGFPGLPGREGAAGPQGPKGEKGTQGEKG
DPGKDGVGQPGLPGPPGPPGPVVYVSEQDRVLASVPGPEGRAGFAGLPGPAGPKGDLGAK
GQQGIPGPKGEKGEPGTFFGPDGRALTPTQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGR
PGRPGMNGLKGEKGEPGDTSVGFGMRGPPGPPGPPGPPGPPGTPVYDGNAFVDSGRPGPP
GLPGHQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGQKGDRGAAGQKGERGEPGGG
GFFGSGVPGPPGPPGYPGIPGPKGESVRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPP
GPPSFPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGGSTGLGFQQVRVWATYQMLVDQVP
QVPEGWLIYVADREELYVRVRNGFRKVLLEAHTPLPHGTDNEVAVLQPPLVQLHEGNPYP
RREAPHPTARSWRADDILASPPRLPHPQPYPGAPHHGAYAHLRPVTTMASPPHTHHDFQP
VLHLVALNSPQSGGLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSVVRRADRGS
LPVVNLRDEVLFPSWEALFLGSEGWLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDTSGR
RLTESYCETWRTDSRAATGQASSLLSGRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccctagcagccgccgcggccaccacagcctcctgctgcttgcctgctgc
ctctcagccgcccaggctcaactgctgtcctggctatggtccgggaacagtgcctggccc
acagccgcaccagcctccaagcccccggacatctcacctgtgtggcccacggaggatacc
accacgcacgtggccccccgggatgcttccaccgattggtggaaagtccctgctagcccc
acagcccctctggggaggccagaggcggggcagggccagacccccgctggccccacagcc
tccacctcgagcccggacctgagggaggaaaacatcgccggtgtcggagccaagatcctg
aacgtggcgcagggcatccggagcttcgtccagctgtgggacgacgctaagggcaccacc
cctgccgagagctctgccgggacagggatgctggcccccgcgacccccacagaccccctt
tctactgccccagccgagggctccaccagggcagagatgccgcccccaacggacaccaca
gacaccctctccacccctggaccctccagcatcccccaggacagcgggaccaccctccag
ctgagcaccaaggccctgagctcttcagacacccagatgaccgaggccagcaccctacca
gtgcccacccagccgccaccctcccctggcagaccctggttcagggagtccttggtaccg
ccgaccccaggtagattttctctttcctctgtgctggcccgggcgcctccctggggaagc
cagctgcccctcgggcggcccctgcagctggacggtgaaggactcttgcttgcagcagcc
cgtcccggccagcagcacgctgacgaccacaggccaacgccgcctcttcctcccctggtg
acgggttccttgggcaggcacactgccctctgggctctctcctctgatccccctgccaag
ctgtctcatgtcgcagtctcagctctaactgtggacagtggtgcttgggctccccacgtg
gctgattctgtggggcccggtcttgctaacaagtctacactgctcggggctgctgagctg
gctgccactgggcagcctgtccccaccaccgctggccgctgcctgcccctgccgccctcc
ctggctctctgcggcaacctgggcatcaggcgctcctggtggcccaaccacctccgccac
gcaagtcgggaggaggtgcaggctgaggtcccggcctggggagcgctgctccggacccac
tgccaccgcttcctggcctggttcttctgcctgctgctggcacccccctgcgggcccggc
ctgccgcccggccctccaccctgtcgccagttctgcgaggccctggaggatgcatgctgg
agccacctggatgggcgcgggctgccgctcccctgcgcctccctcccaccccgcgaggac
gggcactgcgtgttcatagggccaccggcagacggcgaggtcatggaggtggggctccag
cagctgcttggggagcccccgccctggcaggtggccgtggtgcacgaccctgccgtgggg
cccgcctatgagttcggcgaggacggcagcggtggaggccaggcggcccggagcctcctg
cccggctcgttcttccaggacttctcgctgctggtgcgtgtgcggcccgcctcggcgcgc
gcgggcgtgctctttgcggtcacagaccctgcgcaggcagtggtctcggtgggtgtgaag
ctgacggcggcgcgtggggggcggcagcacgtgcagctgctgtacacggatcccggagcc
accgacacacgcacagccgccagcttcgagctgcctgcgctggatggtcgctggacgcgc
ctggcactcagcgtggatggcgcgtacgccaggctcttcgtggactgtaaggaggtgcag
ggccagcccctggcgcactcgctgcacgacctgcagctggagccggacgcccgcctcttc
gtggcccaggccggtggagcggaccctgaaaagttccagggtctgatctcagagctgagg
ttgcgcagggatcctcgggtgagcccccggcagtgccaggacgaggacgaggacgacgat
gatgatggggtgtctggagacctgggcagcgggctcatggagacccaggagcatccccgg
gaggagttgggcgcgcccctggggcccaggctccccgaggctcctccagtcacttctcca
cccttggccggagtcggcactgaggaggacttgagaactgaggaggtagaggagtcaacc
acggtgtcttcgttaggagctcagaccctccccagcttgggcacagtcggcacgtgggac
gagaatgtttggagccctgggagcagcgtgaaagagcaaggcctgaaggggcagaaggga
gagcccggtgctcagggcccccctggccccatcggcccccaaggtcctgcaggcccagcc
atagacagccacgaggcacagcctgtttctggaccacagggaccccctgggcccccgggg
cccccgggacccccggggaaggacggcacccctggaagggacggtgagcctggtgatcct
ggtgaagatgggaagcccggggacactgggccacagggcttcccaggaaccccaggagac
gtgggtcccaagggcgagaagggggatcctggagtcggaccgaggggacccccaggaccc
caggggcctccagggcccccagggccctccttcaaacctgacaggctgaccttcatcgac
atggaggggtccggttttggcggcgacctggagagcctccgcggccctcgaggcttcccc
ggcccccccgggccccctggtgtcccaggcctgccaggggagccaggccgctttgggatg
aacagctcggacgtccctggacccgcaggcctgcccggcgtgcctgggagggatgggctg
cctgggcttccagggcccccgggacccccaggtactccaggaagagacggacaaccagga
ctgactggacagaaaggcagcctcggtgaggcgggcgccccaggacccaagggaagcaag
ggagaccctggccccatcggcgctcccggggagcaaggcctggcaggagaccccggaccc
gcaggcccgccagggccccctggccccccggggcccccaggcccaggattcgccgcaggg
tttgatgacatggaaggctccgggagccccttctggtcaacagcccgaggtgccgacggg
ctgcagggaccgcctggcacgcccggagtcaagggggatcctggagctgtggggccacca
gggagcaagggagaagttggagcggacggagcacctggcttccccggcctcccaggcaga
gagggtgcagctggaccccagggaccaaaaggagaaaaggggactcagggagagaaagga
gacccagggaaggatggagtggggcagccaggactcccgggaccccctggacccccaggg
cctgtcgtctacgtgtcggagcaggatagagtgctggcgagcgtgccaggccccgagggc
cgtgcgggctttgctggcttgcccggaccagccgggccaaagggagacctgggcgccaaa
ggccagcagggcatcccgggacccaagggtgagaagggagagccgggcacgttcttcggc
cccgatggcagagcactgactcccacccagaaaggagccaagggtgagcccggcttccga
ggacccccgggtccgtatgggcggcccgggcacaagggagagatcggattccctggacgg
ccggggcgtcccgggatgaatggactgaaaggggagaagggggagccaggggacaccagc
gtgggattcggcatgaggggtccacctggcccacctgggcctccggggcccccaggccct
cccgggactcctgtctacgacggcaacgcatttgtggactctggccgccctggacccccg
ggattgccagggcaccaggggccttctggacccaaaggtgacaaaggagatgtgggcccg
cccggaccaccagggcagttcccgttcgacctcctccagctgggtgctgagatgaagggg
cagaagggggaccgaggggccgctgggcagaaaggagaaaggggtgagcccgggggcgga
ggatttttcggctccggtgtgcctggaccccccggcccgcccggctacccagggattccg
ggccccaagggagagagcgtccgcggccagcccggccctccgggacctcagggaccccct
ggcattggctacgagggacgccaggggcctcctgggccccccggacccccagggcccccg
ggacccccttcctttcctggcccctacaggcagaccatcagtgttcctggcccgccaggc
ccacctgggcccccaggaccccctggatccatgggcacttcttcagggggatccactggg
ctgggcttccagcaggtgagggtctgggccacgtaccagatgctggtggaccaggtgccg
caagtaccggagggctggctcatctacgtggccgacagggaggagctgtacgtccgggtc
cggaatgggttccggaaggttctgctggaggcccacacacccctcccccatgggacggac
aacgaggtggccgtcttgcagccccccctggtgcagctgcatgagggtaatccctacccc
cgccgggaggccccacacccgacagcgcggtcctggcgggcagacgacatcctggccagt
cccccgcgcctgccgcacccccagccctaccccggcgccccgcaccatggcgcctacgca
cacctccggccggtaaccaccatggcctcgcccccccacacccaccacgacttccagccg
gtgctgcacctggtggcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggc
gccgacttccagtgcttccagcaggcgcgcgccgcggggctggccggcaccttccgcgcg
ttcctgtcctcgcggttgcaggacctgtacagcgtcgtgcgccgcgccgaccgcggctcc
ctgcccgtcgtcaacctcagggacgaggtgctgtttcctagctgggaggccttgttctta
ggctccgagggctggctgaagcccggtgcccgcatcttctccttcgacggcagagatgtc
ctccagcatcccgcctggccccagaagagcgtgtggcacggctcagacaccagtgggcgg
cggctgaccgagagctactgcgagacatggcggacggacagcagggcggccacgggccag
gcctcctcgctgctgtcgggccggctgctggagcagaaagctgccgggtgccacaacgcc
ttcatcgtcctctgcatcgagaacagcttcatgacgtcctcctccaagtag
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