Orrella daihaiensis: DHf2319_00960
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Entry
DHf2319_00960 CDS
T08894
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
odh
Orrella daihaiensis
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
odh03032
]
DHf2319_00960 (gyrB)
03400 DNA repair and recombination proteins [BR:
odh03400
]
DHf2319_00960 (gyrB)
Enzymes [BR:
odh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DHf2319_00960 (gyrB)
DNA replication proteins [BR:
odh03032
]
Prokaryotic type
DNA Topoisomerases
DHf2319_00960 (gyrB)
DNA repair and recombination proteins [BR:
odh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DHf2319_00960 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Tropomyosin
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UOD50543
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Position
203967..206414
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AA seq
815 aa
AA seq
DB search
MSDTEQTNQGAYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALA
GHCDDIVVTIHSDNSISVTDNGRGIPTDVHKDDEFERSAAEIVMTELHAGGKFDQNSYKV
SGGLHGVGVSCVNALSAWLRLTIRRNGEVHQMEFRRGERVAPLTVTGKTERRGTEVHFLA
DTEIFNNVEYHYDILSKRLRELSFLNNGVKIRLVDQRQGKEEDFAFSGGVQGFVQYINRS
KTVLHPNVFAVATESEAGGVPVGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAA
MTRVINKYIADNELAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRPA
VEEAVAKTLETWLLEHPNDAKALCSKVVEAARAREAARKAREMTRRKSVLEGAGLPGKLA
DCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLIASEQIA
TLITALGTSIGPDFNLEKLRYHRIIIMTDADVDGAHIRTLLLTLLYRQMPQLVEQGHVYI
AQPPLYKVKAGKEERYLKDELEEAQFMLQMALKDAEVIPREGQSPIRGEALEELARQYSL
AEAVVARLSRFMDEQALNAIVGGVSLKLDTLEQAQRSAAELLAHIQDPLLPGVVDVQAQV
DTKTEKFKVMVLRNHHGNIRVTNFDEDFVNGADYAVLVKASETFKDFVGAGAFVARGEGE
KRKESAIETFGQALSWLRSEAERGVSKQRYKGLGEMNPDQLWETTMDPAVRRLLRVQIED
AIAADELFTTLMGDQVEPRRDFIETHALQASNIDL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatactgaacaaacaaatcaaggcgcttacggcgccgactcaatcaagatgctc
aagggccttgaggcggtgcgtaaacgcccgggcatgtacatcggagacacctctgatggc
acgggtttgcatcatatggtgtttgaggtggttgacaacgcaattgacgaagctttagct
ggtcactgcgatgatattgtcgtcaccattcattcagacaactcgatttccgtgactgat
aatggtcgtggcatcccgactgatgtccacaaggacgatgagtttgagcgcagtgcggcc
gagattgtcatgaccgagttgcatgccggcggaaagtttgaccagaactcttacaaggtg
tccgggggcttgcatggcgtcggcgtgtcgtgtgtgaacgccttatctgcctggctacgc
ctgacgattcgtcgcaatggcgaagtccatcaaatggagttccgccgaggtgagcgcgtt
gctccgttgacggttacgggcaagaccgagcggcgcggtacggaagttcactttctcgcg
gataccgagatcttcaacaatgttgaatatcactatgacattttgtccaaacggttacgc
gaactttcgtttttgaataacggcgtgaaaatccggctggtagatcagcgccagggcaag
gaagaggattttgcattttcaggtggtgttcaaggctttgtgcaatatatcaatcgctca
aaaacagtcttgcatccaaacgtgtttgccgtagcgacggaatccgaggctggtggagtg
cctgttggtgtcgaagtcgcgatgcagtggaacgatggttatagcgaacaggtgctttgc
tttaccaacaatattccacagcgtgatggtggaacccacttaaccggcctacgcgcagcc
atgacgcgcgtcattaacaaatatatcgccgacaacgaactcgctaaaaaggccaaggtc
gaaacgacaggcgacgatatgcgcgaaggcttatcttgtgtgctgtcagttaaggtacca
gagccaaaattcagcagccagaccaaagacaaattggtgtcgagcgaagtccgtccggca
gttgaggaggcagtcgctaagacgctggaaacgtggctacttgaacatcccaatgatgcc
aaggccttatgcagtaaggttgtagaggctgctcgtgcgcgcgaagcggcgcgtaaagcc
cgtgaaatgacacgtcgtaaaagcgtgctcgaaggcgcaggtttgccgggcaagttagca
gattgccaagaaaaagatcctgcattgtgtgagctatatatagtggagggtgactcagcg
ggtggctcagcaaaacaaggccgtgaccgcaagttccaggctattttgccgctgcgaggc
aaagtgttgaacgttgagaaggctcgatttgacaagctcattgccagcgaacagattgcc
acattaatcactgcattgggcactagcattggaccggacttcaacctcgagaagttacgc
tatcaccgaatcatcatcatgaccgatgccgatgtcgatggtgctcacatccgcactttg
ctattgacgcttttatatcgtcagatgcctcaattagtagagcaagggcatgtctacatc
gctcagccaccgctctacaaggtcaaggcaggcaaggaagagcgttacttgaaagacgaa
cttgaagaggcacagttcatgttgcagatggccttaaaggatgccgaggttattccaagg
gaaggtcaatcaccgattcgaggtgaagcacttgaagagctcgcacgccagtactcactt
gccgaagctgtagttgcccgcctgtcacggttcatggatgagcaagccttaaatgccatc
gtcggtggtgttagccttaagctagacacattggagcaagcccagcgtagcgctgcagaa
ttgcttgcacacattcaagaccctcttttgcctggtgtcgtcgatgtacaggctcaggtg
gacaccaagactgagaagttcaaagtcatggtgttgcgcaatcaccatggcaatatccgc
gttactaactttgatgaagactttgtcaacggtgcggactatgcggtgttggtcaaagct
agtgaaaccttcaaggattttgtgggtgcgggcgcgttcgtggctcgaggtgaaggtgag
aaacgtaaagagtctgctattgaaaccttcggtcaggcgctttcatggttacgcagcgaa
gccgaacgaggcgttagcaaacagcgttacaaaggtcttggcgagatgaatcccgaccaa
ctttgggaaacaaccatggatccagcagtgcgccgcttgttgcgcgttcaaattgaggat
gcaatcgcagccgacgaactctttaccacgttaatgggtgatcaggtcgaaccgcgcagg
gatttcatcgaaacgcacgccctgcaagcatcgaatattgatctgtaa
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