Orrella daihaiensis: DHf2319_03620
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Entry
DHf2319_03620 CDS
T08894
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
odh
Orrella daihaiensis
Pathway
odh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DHf2319_03620 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odh03019
]
DHf2319_03620 (pnp)
03016 Transfer RNA biogenesis [BR:
odh03016
]
DHf2319_03620 (pnp)
Enzymes [BR:
odh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DHf2319_03620 (pnp)
Messenger RNA biogenesis [BR:
odh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DHf2319_03620 (pnp)
Transfer RNA biogenesis [BR:
odh03016
]
Prokaryotic type
tRNA degradation factors
DHf2319_03620 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
DUF5813
Motif
Other DBs
NCBI-ProteinID:
UOD51007
UniProt:
A0ABY4APP5
LinkDB
All DBs
Position
753738..755903
Genome browser
AA seq
721 aa
AA seq
DB search
MFNKVTQTFQYGQHTVTLETGEIARQASGAVVVSIEDTVVLATVVGNKNAKPGQDFFPLT
VDYVEKTYAAGKIPGGFFKREGRMSEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV
NPEIDPDIAGMIGASAALAISGIPFNGPIGAARVGYVDGQYLLNPTATQLKASKLDLVVA
GTQSAVLMVESEAQELPEDVMLGAVVFGHEQMQAAINAINELVRQGGKPEWDWQPAAKDE
ALIGAVTALAKEPLSAAYQVRQKQQRTTQVREVYADVKAKLAEQAQASGQAEPDSVAVEN
ILHDLESSIVRQQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQVIDAITGEYRDRFLMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRSLVPLL
PEHSDFQYTIRLVSEITESNGSSSMASVCGGALAMMDAGVPLKAHVAGVAMGLILENDKF
AVLTDILGDEDHLGDMDFKVAGTEAGITALQMDIKIQGITKEIMQVALAQAQEGRLHILG
KMRAAIDGSRQELSAFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGCQIDISEDGTI
VISSADLDKAKEAERRISELTADVEVGQVYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGETLRVKVIEADDKGRLRLSVKAIGGIEEQRPELAQPKPAETPAEPE
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtgactcaaactttccagtacggtcaacacaccgtgacgctggagact
ggtgaaatcgcacggcaggcatcaggtgccgtggtggtgtcaatcgaagataccgtggtg
ctagccactgtggttggcaataaaaatgccaagcccggtcaagatttttttccactgacc
gtagactacgttgaaaaaacctacgccgccggcaagatccctggcggtttttttaagcgt
gaaggtcgtatgtccgagaaagagacgctgacctcgcgtctcattgaccggccgttgcga
ccgctattccccgaaggtttctacaacgaagtgcaggtcattatccatgtgctgtcggtc
aaccccgagattgaccctgacattgctggcatgatcggtgcatctgccgctttggccatt
tctggtattccctttaacggccccataggtgctgcgcgtgttggttacgttgatggccag
tacctgttgaatccaactgcaactcaattaaaggcctccaagcttgatttggtggtggcg
ggtacccagtctgccgtattgatggtggaatcggaagcccaagagcttcctgaagatgtc
atgctcggcgctgttgtgttcggtcacgagcagatgcaggcggcgatcaacgcaatcaac
gagttggttcgtcaaggcggtaaaccagagtgggattggcagccagccgcgaaagacgag
gcgctgatcggcgccgtgactgcgttggccaaagagccgctaagcgctgcctatcaggtt
cgtcaaaagcagcaacgtactactcaggttcgcgaagtgtacgctgatgtaaaagcaaag
ctggccgaacaggcgcaagccagtggtcaagctgagccagatagcgttgcggtcgagaac
attttgcacgaccttgagtcgtcgatcgtgcgtcaacagattttgaacggtgagccgcga
atcgatggtcgcgacacccgtacggtgcgccctatcgaaatccgtttgggtgtattgccg
cgagcccacggcagcgctttgttcacccgcggtgagacacaggctctcgttgttgcgacc
ttgggcaccaagcaagatgagcaggtcattgatgccatcacaggcgagtaccgcgataga
tttctgatgcactacaacatgccgccatttgctacgggtgaggctggcaggtttggtgcg
cccaaacgccgtgagattggtcacggtcgtctagccaagcgctcccttgtacccttgtta
cctgagcattcagatttccaatacaccatccgactggtctctgaaatcaccgagtccaac
ggctcctcgtccatggcatcggtctgtggtggcgccttggcgatgatggatgccggtgtg
ccgctcaaggctcatgtggcgggtgtcgcgatgggtctgatcctcgagaatgacaagttc
gctgtattgacagatattctgggtgatgaagatcaccttggtgatatggactttaaagtt
gctggtaccgaagcgggcattacagctttgcaaatggacatcaaaatccaaggcatcacc
aaagaaatcatgcaagtcgctttggcgcaggcccaggaaggccgcttgcatatcctgggc
aagatgcgagctgctatcgatgggtcgcgccaagagctttcggcctttgcaccacgcatg
ctcagcatgaagatcaatcccgagaagattcgtgatgtgatcggcaagggcggtgctacg
attcgcgcgctgaccgaagagaccggatgtcagatagacatttccgaagatggcaccatt
gtgatttcgagtgctgatctggacaaagccaaggaagctgagcgtcgtatatccgagttg
accgctgatgttgaagtcggtcaggtctacgagggtagtgtgctgcgtttgcttgatttc
ggtgcaatcgttcaggtcttgccaggccgtgatggtttgctgcatatctccgagattgct
aactaccgcatcgctaatatcaatgacgtgttgaaggtcggtgagacattgcgcgtgaaa
gttatcgaagccgatgacaaagggcgtttgcgcttgtcagtcaaggctattggtggcatt
gaagagcagcgtccagagttggctcaaccaaagccggctgaaactccagctgaaccggaa
gcttga
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