Orrella daihaiensis: DHf2319_05775
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Entry
DHf2319_05775 CDS
T08894
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
odh
Orrella daihaiensis
Pathway
odh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DHf2319_05775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odh03019
]
DHf2319_05775
Enzymes [BR:
odh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DHf2319_05775
Messenger RNA biogenesis [BR:
odh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DHf2319_05775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
UOD51343
UniProt:
A0ABY4AM35
LinkDB
All DBs
Position
1193590..1195071
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AA seq
493 aa
AA seq
DB search
MTDSDIPQAVDAAVAAPAVQSPSPSFDEIGLHSLILQAVKQTGYTVPTPIQAQALPEVMA
GRDVMGAAQTGTGKTAAFTLPILHRLMPLANASASPARHPVRALILTPTRELADQVFESV
KRYSLYTPLRSAVVFGGVDIGPQKDALRQGCEVLIATPGRLLDHLSQNTVNLSQVGILVL
DEADRMLDMGFLPDLDRIIRALPAQRQTLLFSATFSAEIRKLARTYQKTPVELEVAKRNA
TADTVTQIAYPVAEEDKRAAVVHLVKSKGLNQVIVFSNTKIGTSRLARQLERDGVKAESI
HGDKSQADRMKALDAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYSAEDYVHRIGR
TGRAGASGDAISLYTPAQEKLLIEVEKLIKRPIERGQLMVPKRDLDSSRGSSARSLPAHD
RGRGRGKAYVEPPKPVIDEFFLKPYEPSASAPSKPAAVKPTAPNRKAGLGVLLGAAPKPV
DKDTANSGEPVGN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgacagatagcgatataccccaggcagttgatgccgcagttgcggcacctgctgtacag
tccccttcgccaagctttgatgagattggcttacacagcctgattcttcaggcggttaaa
caaaccggctacacggtgcccacgccgatccaggcgcaagcgctgcccgaggtgatggcg
ggtcgagatgtgatgggcgctgcccaaactggcaccggaaagaccgcggcgttcactttg
ccgattttgcaccgattgatgccattggccaatgccagtgcatcgccagctcgtcatcca
gtcagagccctaatcctgacccccactcgagaactcgctgatcaggtgtttgagagtgtt
aagcgctacagtctctacacccctttacgcagtgcggtggtatttggtggtgtggacatt
ggcccgcaaaaggatgcgttgcgccagggctgtgaggtcttgattgccacgccgggccgt
ttgttggatcacctttcacaaaacaccgtgaacttgtcgcaggtcggtattttggtactc
gatgaggctgatcgcatgctggacatgggatttttgcctgacttagaccgaattattcgt
gccttacctgcgcagcgtcagactctactgttttcagcgacgtttagcgccgagatcaga
aagctcgcacgcacctatcaaaagaccccggttgaattggaagttgccaaacgcaacgcc
acggccgacacggtcacgcaaattgcctatccggtggctgaagaagacaagcgcgcagcc
gtggtgcatctggtgaagtccaaaggtttgaatcaagtgattgtgttttccaacaccaaa
atcggcacatcccggctggcgagacaactagagcgtgacggtgtaaaggctgagtcgata
cacggtgacaaatcacaagctgatcgcatgaaggcattggatgcgtttaaagccggtgag
ttggaggtgctggtggcgaccgacgtggctgcccgtggactcgacgtggccggtgtgccg
tgcgtcattaactatgacctgccgtatagcgctgaagactacgtgcatcggatcgggcgc
acgggtcgtgcgggtgcctcgggtgatgcgatttcactttacaccccagcgcaggaaaag
ctcctgatcgaagtagaaaagctgatcaagcgtccgattgagcgcgggcagttgatggtg
cctaagcgtgatctggattcttctcgcggatcaagcgctagatccttaccagcccatgat
cgcggccgtggtcgtggtaaggcgtatgtcgagccgccaaagcctgtgatcgatgaattt
tttctaaagccctacgaaccctcggcaagtgctccgtctaaaccagccgctgtcaaaccc
accgcaccgaatcgcaaggcagggcttggcgtgttgctcggggccgcgcccaagccggtt
gataaagacacggcgaattcaggcgagcctgtcggtaactag
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