Orrella daihaiensis: DHf2319_06585
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Entry
DHf2319_06585 CDS
T08894
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
odh
Orrella daihaiensis
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odh03019
]
DHf2319_06585 (hrpA)
Enzymes [BR:
odh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DHf2319_06585 (hrpA)
Messenger RNA biogenesis [BR:
odh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DHf2319_06585 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
AAA_30
NACHT
T2SSE
ResIII
AAA_25
SLFN-g3_helicase
AAA_11
NES_C_h
AAA_23
AAA_16
Zeta_toxin
TsaE
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
UOD51484
LinkDB
All DBs
Position
1385910..1389746
Genome browser
AA seq
1278 aa
AA seq
DB search
MNSEPSADLTVAKSPRAEPVISFDPALPVTQARDEIARAIASHQVVIISGQTGSGKTTQI
PKICLSIGRGRAGMIGHTQPRRLAATSVAKRIAQELQTSIGELVGYQIRFHQRAASTTAI
KLMTDGVLLAQTQRDRLLKQYDTLIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVVITSA
TIDADRFAAHFAGPDGQPAPVIDVSGRLYPVQVLYHPVTQPRTQIEQGELTGGDDSDEER
ELTDAIVEAVGECARLGPGDVLVFLPGEREIREAAEALRKHHPPSTQILPLYARLSQNEQ
EEIFRPSTSARRVVLATNVAETSLTVPGIRFVVDSGLARVKRYSWRQKVEQLQVEPISQA
AANQRAGRCGRLGPGVCIRLYDELDFKRRREFTEPEILRSSLAGVILRMKSLALDDIDAF
PFVDPPTGRAIADGYQTLQELGALTQKVGRDGQALNHLTAVGRTLAKLPLDPRVGRMLLA
ARDQQCLHEMLIIASALAVQDPRERPMQARELADQAHAKFSDKQSEFLVLLKLWSWYHDQ
VAHKSSQRQLVKLLKQNYLSVPRLREWHDIHGQLAALVGEQGWRVNQTEATFEQIHSALL
AGLLGQVGLSAEQAGHYQGVRGIRFWIHPSSKLAKRAGKWIMAAELVETSKLYARCIAKI
EPVWIERVGGHLLQRSWSDPRWDGRRGQVVAHERATLFGLPVYSGRLVNYGPIDVVQARQ
TFIREALVPGELDVPFDFVAHNRRLIRQIEQLEHRSRRPDILVDEELIARFYDQLLPADI
CQLAKFRHWFRHLPAEQQVRWKLSREDLMQHEAAGITSDVFPKAVSWQGTQLKLDYHFEP
GSSKDGVTLTVPLVVLNQLSPERWEWLVPGMLKEKVQWLVKSLPQKLRKHCVPLPEYAKA
FFDRWFDRLDHPPGSLLAAIIQDIDTQFHVKVAISDFRLDSLPAHLFMNFKVIDEHGRML
KAGRNLAQIKADLGRQTQQTLQAMAAEGQPVMADVPQQEITGWCFDELPEIMEIRRQRQT
VIGYPALVDEGSHCRIDVFDEPHIAREHHRRGVIRLLRLALKEQIRFIEKNLPQSLKLGV
LYMPLGTWDELRGQIVDAALYQACLAGDWPVTAAQFDACREQAKERVGLLAQEMGRLVLE
ILQVWSDVQKRLVQFKVHPSACQDIHTQLEQLIHKYFVVQTPYEHLRHFPRYLQAVLVRF
DALRADADKDQAKINEMAPLVANYQRAKASLAGAPDPALDEFRWMLEELRVALFAQRLRT
PYPVSVKRLHKVWQALAR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
ttgaattccgagccgtctgcggacttaaccgttgccaaatccccacgagctgagcccgtg
atcagttttgatccggcattgccagtcacacaggcgcgtgatgaaatcgcgcgcgctatt
gcgtctcatcaggtcgtgatcatcagcgggcagaccggctcaggcaaaaccacacagatc
ccgaaaatctgtctgtcgatcggcagagggcgggcaggcatgatcggccatactcaaccc
agaaggctggcagccacctcggttgccaagcggattgcacaagagttgcagacatcgatt
ggtgagctcgttggctatcaaattcgatttcatcaacgggcggcatcaactaccgcgatc
aaactgatgaccgacggcgtgttgttggcacaaacccagcgtgatcgcttgctaaagcaa
tatgacactctgattatcgatgaggcacacgaacgtagcctaaatatcgacttcttattg
ggttacctacgccagctgttgcccaagcgacccgacttaaaagtggtgattacatcagcg
accattgatgctgaccgttttgcggcgcatttcgcaggcccggatggtcagccagcgcct
gtgattgatgtgtcgggcaggttgtatccggttcaggtgctgtatcaccctgtcacgcag
cctcgcacacagatcgagcaaggcgagttgacaggcggtgatgacagcgacgaggagcgc
gaactgaccgatgccattgtcgaggctgtgggtgaatgtgcacgcctcggtcctggtgat
gtgttggtatttttgcccggtgagcgtgaaattcgcgaggctgctgaggccttgcgcaag
catcatccgccgagcacgcagatattgcccttgtatgcccggctatcccaaaatgagcag
gaggagatctttcgacctagtaccagcgctcggcgcgtggtactggccaccaatgttgcg
gagacctccctgacagttcctggtattcggtttgtggtggattctggcctggcacgcgtt
aagcgctactcctggcgtcagaaagtcgaacagttacaggttgagcctatcagtcaggcg
gctgccaaccagcgcgctgggcgttgtgggcgtttaggcccaggcgtttgtattcgccta
tacgacgagttggacttcaaacgccggcgtgaattcaccgaacctgaaatcctgcgttca
tcgttggcaggcgtcattttgcgcatgaagtctttggcgctcgatgatattgatgccttt
ccatttgtcgacccgcccaccggtcgggccatagcggatggttaccagacactgcaagaa
ttgggtgccttgactcagaaagttgggcgtgacggtcaagcgttgaatcatttgacagcc
gtcggtcgcactctggcaaagcttcccctagatcccagggttggccgcatgttgttggca
gccagagatcaacagtgtttgcatgaaatgctgatcattgcgtcggcgctagcggtgcag
gaccctcgtgagcggcccatgcaggccagagagcttgccgaccaagcacatgccaagttc
tctgataaacagtcagagtttttagtgctgctcaagctttggagttggtaccacgatcag
gtagcgcataaatcctcacaacggcaattggtcaagctcttaaagcagaattacctgtca
gtgccgcgtctgcgcgaatggcatgatatccatggccaacttgccgctttggtgggagag
cagggctggcgggttaaccaaactgaagccacgtttgaacagattcactctgccttgttg
gctggtttgcttgggcaagtaggtttgagcgctgagcaagcggggcattatcagggcgtg
cgtggcattcggttctggattcacccgagctccaagttagccaagcgcgcaggcaaatgg
atcatggccgctgaattggtcgaaaccagcaagctctatgcgcgttgtatcgccaagata
gagcctgtttggatagagcgagttggtggtcatttgttacagcgtagctggtcagacccg
cgctgggatggcaggcgtgggcaggtggtcgcgcacgagcgagcgacactatttggtttg
ccggtctacagcgggcggctagtcaattatgggcctatcgatgtggtgcaggcccgtcag
acattcatacgcgaggcactggtgcctggcgaactggatgtgccatttgattttgtggct
cacaatcggcgtttgattaggcaaattgagcaactcgagcatcgtagccgtcgtcctgac
attttggtggatgaggagctaattgcgcgattttatgatcagctattgccagcagatatt
tgccaactcgccaaatttcgacattggttcaggcatttgcccgctgagcaacaagtgcga
tggaaactgtcgcgggaggacttgatgcagcatgaggctgccggtatcaccagcgatgtg
tttcccaaggccgtgagttggcaaggcacccaactaaaactcgattatcactttgagccg
ggttccagcaaagatggcgtgactttgacggtgcctctggtcgttctgaaccaactatcg
cctgagcgttgggagtggcttgtgccgggcatgctcaaagagaaggtgcagtggttagtg
aagtctctgccacaaaagctgcgtaagcattgtgtgcctttacctgagtatgccaaggca
ttttttgatagatggtttgatcgcctcgatcacccgccgggcagtttgttggctgcgatc
atccaggatatcgacacacagtttcatgtaaaggtggctatttcggattttcggcttgac
agcttgccagcacatctattcatgaatttcaaggtgattgatgagcacggtcgcatgctc
aaagccggtcgaaacctcgctcaaatcaaagctgatcttggacgtcagacgcaacagacc
ctgcaggctatggccgcagagggccagcctgtaatggcagacgtacctcagcaagagatc
actggctggtgtttcgatgagctacctgaaattatggagatccgtcgtcaacggcaaacg
gtgatcggctatccggcattggtggacgagggcagccactgtcgcatcgatgtatttgat
gagccccacatagcccgtgaacatcatcgcaggggggtgattcgacttttacgcttggca
ctgaaggagcaaattcgttttatcgagaaaaacttaccgcagtcccttaagctaggtgtg
ttgtatatgccgttgggtacgtgggatgaactgcgcggtcagattgtcgatgcagccttg
tatcaggcttgtttggctggtgattggccggtcacggctgctcaatttgatgcttgtcgt
gagcaggccaaggagcgggtagggctgctagcacaagaaatggggcgattggtgttggag
atcctgcaggtctggtcagatgtgcaaaagcgtttggtgcaattcaaagtgcatccaagc
gcttgccaagatattcatacccaactcgaacaattgattcacaagtactttgtggtgcaa
acgccttatgaacatctgaggcactttcctcgctacttacaggctgtattggtaaggttt
gatgctttgcgcgcagatgcggacaaggatcaggccaaaatcaatgagatggcgccactg
gtggcgaactatcaacgtgccaaggcaagcttggctggtgcgccagatcctgctttggat
gagtttcgctggatgctcgaggagctgagggtggcgttatttgcgcaacgattgcgcacg
ccgtatcccgtatcggtgaagcgattgcataaagtctggcaggccttggcacgttaa
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