Orrella daihaiensis: DHf2319_07310
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Entry
DHf2319_07310 CDS
T08894
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
odh
Orrella daihaiensis
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
odh03009
]
DHf2319_07310 (rlmD)
Enzymes [BR:
odh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DHf2319_07310 (rlmD)
Ribosome biogenesis [BR:
odh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DHf2319_07310 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
Cons_hypoth95
PCMT
TRM5-TYW2_MTfase
Methyltransf_11
MTS
Methyltransf_4
TPMT
Methyltransf_23
Methyltransf_15
Methyltransf_12
PrmA
Methyltr_RsmB-F
Ubie_methyltran
DOT1
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
UOD49306
LinkDB
All DBs
Position
1545575..1546885
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AA seq
436 aa
AA seq
DB search
MFELHVESLDHEARGVAHLDGKVVFVEGALPGEYVTAQLIKKKPKFNTARATDIHKTSWL
RVQPQCPHFGVCGGCAMQHLAADAQVAVKQRVLEDAFKHLADLKPEQMLSPIHGPSWGYR
FRARLTVRLVPRKGGVLVGFHERRSSYVADMSSCSVLPPKVSDLLVPLRRLIESMSIPDR
LPQIEVAVGDSVIALVLRHLEALDSRDEEFLRAFGQKHGVQWWLQPKGPDTVALLDGQDS
SELAYSLPAFDVRMPFKPTDFTQVNHQINRTLVSKALSLLEVNPTDQVLDLFCGLGNFTL
PLARQAKNVLGIEGSDVLVQRAFQNAETNGLRNVTFEARNLFEFTLEDLHALPVFDRLLI
DPPREGALAVCEALANQREADRPKRIVYVSCNPATLARDAAVLCHLGSYRLRQAGVINMF
PHTGHVESIAVFEPNR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaattgcacgttgagtcgcttgaccacgaggctcgcggcgtagctcacctcgat
ggcaaagtggtgtttgtcgagggtgcgttgcctggcgaatatgtcacagcgcagctgatc
aagaaaaagcccaagttcaacactgcccgagctaccgatattcataaaaccagttggctg
agggtgcagccccaatgcccccattttggtgtgtgtggtggatgtgcgatgcagcatttg
gccgcagatgcgcaagtggctgtgaagcagcgtgtgttagaggatgcttttaagcatttg
gcggatttaaaacccgaacagatgctttcaccgatccacgggccgagctggggatatcgt
ttccgtgccagattgaccgtgcgtctcgtgccgcgtaaaggtggtgtcttggttggtttt
catgagcggcgtagtagttatgtcgcagacatgtcaagctgttctgtgctgccgcctaag
gtgagtgatttgctggtgccactgcgacggctgatcgaatccatgagcatccccgatcga
ctgccacaaattgaagtggctgttggtgactctgttattgctctggtattgcgtcatctt
gaggctttagatagcagggatgaggagtttttgcgggcatttggccaaaagcatggtgtg
cagtggtggctgcaaccaaagggacctgatacggtggcgttacttgacgggcaggactca
tcagagcttgcttacagtttgcccgcatttgatgtacgcatgccctttaagccaacagac
tttacgcaagttaatcatcagatcaaccgcacgctggtatccaaagcgctgtcgttatta
gaggttaatcccacggatcaagtgcttgatctgttttgtgggcttggcaactttactttg
ccactggctcggcaagccaagaacgtgcttggtattgagggtagcgacgttctggttcaa
agagcgtttcagaacgctgaaactaatggtttgcgtaatgtaacttttgaagcccgaaat
ctatttgaatttacgcttgaagatcttcacgccttaccagtttttgaccgtttgttgatt
gacccgccgcgtgagggcgcattggcggtctgtgaggctttggccaatcaacgtgaggct
gaccgccccaagcgtatcgtttatgtctcgtgtaatccagccacattggcccgtgatgcc
gctgtgctgtgtcacctcggttcataccggctacgtcaagcgggtgtcatcaacatgttt
ccacacacaggccatgttgaatcaattgcagtttttgagccgaaccgatga
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