Orrella daihaiensis: DHf2319_08970
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Entry
DHf2319_08970 CDS
T08894
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
odh
Orrella daihaiensis
Pathway
odh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DHf2319_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odh03019
]
DHf2319_08970
03009 Ribosome biogenesis [BR:
odh03009
]
DHf2319_08970
Enzymes [BR:
odh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DHf2319_08970
Messenger RNA biogenesis [BR:
odh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DHf2319_08970
Ribosome biogenesis [BR:
odh03009
]
Prokaryotic type
rRNA processing factors
DHf2319_08970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
UOD49602
LinkDB
All DBs
Position
1877336..1880158
Genome browser
AA seq
940 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARAYFKEGIDVRSARIQDALKEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELREAMDQLKVPQGMSIIARTAGIGRSVEELQ
WDLSYLLQLWAAIDGAAQSNQAPILIYLESSLVIRAIRDYFSPDIGEILIDTDDIADQAT
AFMSVVMPDNVQRVKRYRDDVPLFSRFQIEHQIETAYSRHVDLPSGGSIVIDHTEALVAI
DVNSARATRGADIEETATRTNLEAAEEAARQLRLRDLGGLIVIDFIDMEEPRNQRAVEQR
LRDALHVDRARVQMGKISRFGLIELSRQRLRPALSEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVEVATFLLNEKRTDITKMEARLKINLMLIPNKHLETPH
HIIERLRHDDPRLEETKASFEMLEEPASVDLSLTRSEKEIKAKPEALVKGVTPAQPAPPA
TQKLPTKRTSVAAKSEGSGLWGQIVKLFSSILGGTTEPQQTKAKPKEGQGRSDRRGSNNR
NRRAGRPDNRRHDRADADVQTRQQNQPAAQAAAENADAEQETSGANSRSRRSRRSRSRNK
ANTGETMAANELNSLQAQEQIANSVETEDGINTTASQQPPATELADEAATDKPRRRSRRG
RRGKRSGDGTQTETDQLMGDNPEMAVQASVDASGETTPEPSSVELAVETSAEPASASTTT
IRAETSLANDMMETVASAPEQIVPSSDLAASSSQEVEALPSSEPAVQTDAPVYAQAQATQ
AAPIPTPSTGNGHDTSAATVVAVPSRTDDILVRAPVADKATLNAIVASAGLQWVESNPDR
VELVQREVASQPPVKLGREPKILPPPAQVQLTQVETRSGV
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaatgcaacgcaccaagaagaacttcgcgttgcaatcgtagat
ggacaaaagctcatcgatctcgatatcgagactgccgggcgcgagcaacgtaaaggcaac
atatacaaaggtgttatcacccgaatcgaaccaggccttgaagcctgcttcgttaactac
ggcgaagatcgccatggtttcttgccctttaaagaggtagcgcgcgcctactttaaagaa
ggcattgatgtgcggtcagctcgaatccaggatgccctgaaagagggtcaggaactcatc
atacaagttgagaaagaggaacgcggcaacaagggagcagccttgaccacgttcatctca
cttgcgggccgctatctcgtgctgatgcctaataatccccgtggcggcggggtatcgcgc
cgtgtcgagggtgaagagcgccaagagctacgcgaagccatggaccagctcaaagttcct
cagggaatgagcatcatcgcccgtacagcgggtatcggtcgctctgtcgaggaattgcag
tgggatctttcctatttattgcaattgtgggctgcgatcgacggagccgcacaatccaat
caggcacccatccttatctaccttgagtcgagcctggtgatacgtgccattcgcgactat
ttctcgcctgacatcggtgagattttgatcgacaccgatgatattgccgatcaagccacc
gcctttatgagcgtggtcatgcctgacaacgtgcagcgggtaaaacgataccgagatgac
gtgcctctattctcgcgattccagatcgaacatcagattgaaacagcgtactcgcgccac
gtagacctaccttctggcggttcaatcgtgatcgaccataccgaggcactcgtggctatc
gacgtgaactcggcacgggccactcgtggcgctgacattgaagagaccgccactcgcacc
aacctcgaggccgccgaagaggcggcccgacaactacgcctgcgtgacttgggcggatta
attgtgatcgacttcatcgacatggaggaaccacgtaaccagcgagctgtcgagcaacgg
cttcgcgacgcccttcatgttgaccgcgcgcgggtgcaaatgggcaaaatttcccgcttt
ggtttgatcgagctttctcgtcagcgtctgcgtccggcgcttagcgaaggctctcatatc
acctgccctcgctgcaacggcacaggtgttatccgtgacgcagagtctagtgcactgcat
gttctgcgcctgctacaggaagaagcgatgaaggaaaacacggccgcagtgcacgcacaa
gtgcccgttgaagtcgcgacctttctgttgaacgaaaaacgcaccgacatcaccaagatg
gaggcacgcctgaaaatcaacctgatgctgatccctaacaagcatctggagacgccccac
catatcatcgagcgcctgcgtcatgatgacccccggttagaagagaccaaggccagcttt
gaaatgcttgaagaaccagcctctgttgacttgagtctgactcgtagcgaaaaggaaatc
aaggccaagcctgaggcactggtcaaaggcgtcactccagcacaaccagccccacccgcg
acgcaaaaactcccaaccaaacgtacgtcggttgcagcaaagtccgaaggatctgggtta
tgggggcaaattgtcaaactcttcagcagcatccttggtggaaccacggagcctcagcag
acaaaagccaagcccaaagaaggtcaaggtcgatccgatcgacgaggcagcaataaccga
aaccgacgcgctgggcgcccagacaatcggcgccatgaccgtgcggatgccgatgtgcaa
acacgacagcaaaaccagccggccgcacaagcagccgcagaaaatgcagacgctgagcag
gagaccagcggcgccaacagtcgctcacgccgctcgcgccgtagccgcagccgaaataag
gcaaatacgggcgaaaccatggctgctaacgaactgaacagtttgcaagcgcaagaacaa
attgccaacagtgtcgagactgaagacggtattaacacgacagcctcgcaacaaccgcca
gccactgagctagcagatgaggccgctactgacaaaccccgtcgccgcagtcgccgcgga
cgccgaggcaagcgcagtggcgatggcactcaaactgagaccgatcaattgatgggtgac
aacccggagatggcagtgcaggcaagcgttgacgcgtccggtgaaacaacaccggagccc
tcctcggtcgagcttgcggtcgaaacatcagctgagcccgcatcagcatcgacgaccacg
atccgtgctgaaactagcttggccaatgacatgatggaaacagtcgcttctgcacccgaa
caaattgtccctagcagcgacttggcagcctcaagctctcaggaggtcgaagcattgcca
tcgtctgaacctgccgttcaaacagacgcgcccgtctacgctcaagctcaggccacacaa
gccgcgccaattccgaccccgtcgactggcaacggccacgacacgtcggccgctacggta
gtcgctgtgccatccagaaccgacgatatcttggtacgcgctccagtggcggacaaggca
accttgaatgccatcgtagccagtgctggtttgcagtgggttgaaagcaaccctgatcgt
gttgagcttgttcaacgtgaagtggcgtcccagccgccagtgaagctgggtagagaaccc
aaaatcttgccgcccccagcccaagtgcaattgacgcaagtcgaaacgcgcagcggcgtc
tga
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