Orrella daihaiensis: DHf2319_12210
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Entry
DHf2319_12210 CDS
T08894
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
odh
Orrella daihaiensis
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
odh03016
]
DHf2319_12210
Enzymes [BR:
odh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DHf2319_12210
Transfer RNA biogenesis [BR:
odh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DHf2319_12210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
UOD50185
UniProt:
A0ABY4AM77
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All DBs
Position
2598888..2600771
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AA seq
627 aa
AA seq
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MFVLYEDSGSFKVGLIKSETDASLQVEASSGKRSKIKRSSCILTFESPDADELLRQAPIN
AAEIDPAFLWEVAPQDEFEVSDLANDYYGHTPTALETATLLWCVHDAPIYFHRRGKGKYR
AAPPEILQAALAAQEKKRALAEQQAHWASELIRGELPDEIAQVALSLVTRPDKNTQAYKA
VEQASQQSGLTIEALLLKCGAWPDALSLHRGKFLTMHFPKGTGFAEVASLPAHDDLPLAD
VTAYSVDDISTTEIDDAISVHALEGGWLRVGIHVAAPALGIARNSDLDQIARARMSTVYT
PGEKIPMQPDEVIDHYSLVAGQAVPALSLYVEVHPDTAEIRSHHTRVERLMVTSNLRHNE
LDHEITLEALADDAKSFPYDQWVRPLWTLTLALSAQRDQRRGKPESNNRVDYNFYLDGAA
HDPDTPVRIEPRMRNAPLDRIVAEFMILANRLWAEQLATHHLPGVFRSQQAGRVRMSTHA
LPHEAIGVEYYAWCTSPLRRYVDLVNQRQLLALAEHGVSAPLVAPYQPREDDLFAIIGGF
EAQYGAWSDYQRQMERYWCLRWLDQQQVSCCQASVMRDNLVRLVDIPLTIEISGLPELER
GAQITIEITDTDELNLTVQARYVTHVT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgttgtacgaagacagcggcagctttaaggttggcctgatcaagtcggaaacc
gatgctagcctgcaagtcgaggcctcttctggcaagcgcagcaaaatcaaacgctctagt
tgcatcctgacattcgaatcccccgatgcggatgaattattgcgacaggcacccatcaac
gccgcggagatcgaccccgcatttctgtgggaagttgcgccgcaagatgagttcgaagtc
tctgaccttgccaacgactattacggtcatactcccacggcgctcgaaaccgcaacgctc
ctatggtgtgtgcatgacgcaccgatttattttcatcggcgtggcaaagggaaataccgt
gctgccccacccgagatcttgcaagctgcactggctgcccaagagaaaaagcgtgcgtta
gcagagcaacaagctcattgggccagcgaattgatccgtggtgaactgcccgatgaaatc
gctcaggtagctttgtcactggtcacacgacctgacaagaacacccaggcctacaaagca
gtcgagcaggccagtcagcaaagcggtctgacaatcgaggcactgctacttaaatgcggt
gcgtggcctgatgcgctcagtctgcaccgcggcaagtttttaaccatgcattttcccaaa
ggcacgggatttgctgaagtagcgagcctgccagcgcatgatgatttaccgcttgctgac
gttactgcttactccgttgacgacatttccacaacagagatagacgatgcaatttcggta
cacgctctcgaaggcggttggttacgcgtaggcattcatgtggcagcacccgcacttggg
attgcgcgaaacagtgacttagaccaaatcgccagagcgcgcatgtcaactgtctacacc
cccggtgaaaaaatcccgatgcaaccggatgaggtcattgatcattactcactggttgcc
ggtcaggctgtacccgccctgtcactttacgttgaggtgcatcccgacacggctgagatt
cgatcgcatcacactcgcgttgagcgtttgatggtcaccagtaacctgcgtcacaacgaa
cttgaccacgagatcacactcgaagcactcgcagacgatgccaaatcttttccgtatgac
caatgggtgcgccccctgtggacactaaccttggccctgtctgcccagcgcgatcagcgg
cgtggcaagcccgagtcaaacaaccgggttgactacaacttttatctcgacggtgcagcc
cacgacccggacaccccggtacgaatcgagccgcgcatgcgcaatgccccgctagatcgc
atcgtggctgagttcatgattcttgccaaccggctctgggctgaacagctcgcgactcat
catttgcctggggtatttcgttcacaacaggccgggcgggttcgcatgagtacacatgcc
ctgccccatgaggccatcggcgttgaatattacgcctggtgcacctcgccattgcgtcgt
tatgttgatttggtcaaccagcgtcagttactggcgctggctgagcatggcgtatcagcc
cccttggttgcaccctatcaaccgcgcgaggacgacctgtttgccatcatcggtggattc
gaggcgcagtacggtgcctggtctgattatcagcgacaaatggaacggtactggtgcctg
cgctggctcgatcagcaacaggttagctgctgccaggcaagcgtgatgcgagacaacctg
gttcggctggttgatattccgctgacgatagagattagtggcttgcctgagctagaacgt
ggtgctcaaatcacgatagaaatcaccgatactgatgaattgaacctgactgtccaagcc
cgttatgtgacacatgtgacatag
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