Orrella dioscoreae: ODI_R0239
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Entry
ODI_R0239 CDS
T05133
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
odi
Orrella dioscoreae
Pathway
odi02020
Two-component system
odi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ODI_R0239
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ODI_R0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
odi03021
]
ODI_R0239
Transcription machinery [BR:
odi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ODI_R0239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CEP76_N
Motif
Other DBs
NCBI-ProteinID:
SOE46306
UniProt:
A0A1C3K1W1
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All DBs
Position
I:245316..246752
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AA seq
478 aa
AA seq
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MTRHSLELRHSQHLTLTPQLQQSIRMLQLSALELEMEIAQALTENPMLEREGEPGGDSEG
DAPAEGDAGDSGADYESATVSLEDGMRGSGSSQNDDDDRAFPEAVRAETLREHLLGQLSL
TRVSDRDAALVELLIDELDENGFLASSLEEILGWLPAELECDEDELHAALTLLRSFDPSG
VGAFDVADCLVLQLRHPDPERFPEAADPQVLALARKLCAEHLQLLAGGSAAKLREALHCG
DEALRAAHSLILRLDPRPGRAWTVPAADYAVPDVIVHKTRKGWQAVLNTAVMPRLRINSV
YAQVLASNRSGDHSALQSQLQQARWMVRNVEQRFDTILRVSQAIVDRQSEFFSHGAGAMQ
PLILKDIAGELGLHESTISRATTQKFMLTPFGTMELKRFFGAGVATEAGGSASATAVQAQ
IRQMVAEESAGKPLSDNQIMQMLADRGIVIARRTVAKYREALRIAPASVRKAQASLRT
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgccattccttagaactgcgacacagtcagcacctcacgctgacaccgcaactg
cagcaatccatccggatgctgcagctgtcggcgctcgagctcgaaatggagatcgcgcag
gcgctcactgaaaaccccatgctcgagcgcgaaggcgagccgggcggcgattccgaaggc
gatgcccccgccgagggcgacgcgggtgacagcggcgcggattacgagtccgccacggta
tcgctggaagacggcatgcgcggcagcggttccagccagaacgatgacgacgaccgcgcc
tttcccgaggcggtgcgcgccgagacgctgcgcgagcacctgctcggccagctgtcgctg
acccgcgtcagcgaccgtgatgcggcgctggtcgagctgctcatcgacgaactggacgag
aacggcttcctggcctcttcgctggaagagatcctgggctggctgcccgccgaactggag
tgcgacgaagatgagttgcacgccgcgctcacgctgctgcgctccttcgatccctcgggg
gtgggggccttcgacgtggccgactgcctggtgctgcaattgcgccaccccgacccggag
cgcttccccgaggctgccgatccgcaggtgctggcgctggcccgcaagctctgtgccgag
catcttcagctgctggccggtggcagcgcggccaagctgcgcgaggcgctgcactgtggc
gacgaggccctgcgcgcggcccattcgctcatcctgcgcctggatccgcgtccgggccgc
gcgtggaccgtgcccgcggccgattacgccgtgcccgacgtcatcgtgcacaagacgcgc
aaaggttggcaggccgtgctgaacaccgccgtcatgccgcgcctgcgcatcaactcggtc
tatgcccaggtcctggccagcaaccgcagcggcgatcattccgccttgcaatcgcagttg
cagcaggcgcgctggatggtgcgcaacgtcgaacagcgcttcgacaccatcctgcgggtg
tcgcaggccatcgtcgaccgccagtccgaattcttctcgcacggcgccggcgccatgcag
ccgctgatcctgaaggacatcgcgggcgagctcggcttgcacgagtccacgatctcgcgc
gcgaccacccagaagttcatgctgacacccttcggcaccatggagctcaagcgcttcttc
ggcgcgggggtggccacggaagcgggcggctcggcgtccgccaccgccgtgcaggcgcag
atccgccagatggtggcggaagagtccgcgggcaagccgctgtcggacaaccagatcatg
cagatgctggccgatcgcggcatcgtcatcgcacgccgaacggtcgccaaataccgtgaa
gcgctgcgcatcgccccggcatccgtgcgcaaggcacaggcctcgctgcgcacctga
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