Orrella dioscoreae: ODI_R1001
Help
Entry
ODI_R1001 CDS
T05133
Name
(GenBank) Pectate lyase precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
odi
Orrella dioscoreae
Pathway
odi00040
Pentose and glucuronate interconversions
odi01100
Metabolic pathways
odi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
ODI_R1001
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ODI_R1001
Enzymes [BR:
odi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
ODI_R1001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
SOE47711
UniProt:
A0A1C3JWU7
LinkDB
All DBs
Position
I:1093642..1094835
Genome browser
AA seq
397 aa
AA seq
DB search
MRRWLLAMAVFLGGTAAASETCAVPDAQCPIVSSLLQYREGYGQKATGGLDGRFVEVTSD
QDAGPGTLRAALDGARKSKTPTWIRFASDMTIVLKTQLRVPSNVTVDGRGRRVTLIDDGL
GVYRSRNVILTHLSIDGRLTRFTQAVNVANDSRDVWVNHMDLARFSDRLLNVKNGSTDVT
VSWNKFHDSNKVMLLNNITSKDMYKNYERDKIARVTLHHNYFLNTVQRNPRGQFGTFHLY
NNLLEDWNLYGMSFSLEARALVEGNIFSNRSRRTCLEPERTPTVHGIDVNYCDKLPDSPN
RTALENGASDRRNYEKTKAQYGYERGYKAFLRVKDNLYLGEAKAVLQDYQPESAPTPPYC
YGYETPTPAVAEKIRKLAGNTSGDVPLPKARTGPACS
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgctggctgcttgccatggcggtgttcctgggcggcacggccgcggcgagcgag
acctgcgccgtgccggatgcccaatgcccgatcgtgtcctcgctgctgcaataccgggaa
ggttatgggcagaaggccacgggcgggctggacggccgattcgtcgaggtcacctccgac
caggatgcggggcccggtaccttgcgggccgcgctggatggcgccaggaaatcgaagacg
cccacctggatccgcttcgcctccgacatgacgatcgtgctgaagacgcagctgcgcgtg
ccgtcgaacgtcacggtcgacggacggggcaggcgagtgaccctgatcgatgacggcctg
ggcgtgtaccgcagccggaacgtgatcctgacgcacctgagcatcgacgggcgcctgacc
cgcttcacgcaggccgtgaacgtggccaacgacagccgggacgtgtgggtgaaccacatg
gacctggcgcgcttctcggaccgcctgctgaacgtgaagaacggctcgaccgacgtgacg
gtgtcgtggaacaagttccatgactccaacaaggtgatgctgctgaacaacatcacctcg
aaggacatgtacaagaactacgagcgcgacaagatcgcgcgcgtgacgctgcaccacaat
tatttcctgaacaccgtgcagcgcaacccgcgagggcagttcggcactttccacctctac
aacaatctcctggaggactggaacctgtacggcatgagtttcagcctggaggcgcgggcg
ctggtggaagggaatatcttcagcaaccggtccaggcgcacgtgcctggagcccgagcgc
acgccgacggtgcacggcatcgacgtgaactactgcgacaagctgccggattcgcccaac
cggaccgcgctggagaacggcgcgtcggaccggcgcaattatgaaaagaccaaggcccag
tatggctacgagcggggctacaaggccttcctgcgcgtgaaggacaacctgtacctgggc
gaggccaaggcggtgctgcaggattaccagcccgagtcggccccgactccgccttattgc
tatggctacgagacaccgacgccggcagtggcggagaagatccgcaagctggcggggaac
accagcggcgacgtgccgctgccgaaggcgcgcaccgggccggcctgctcctga
DBGET
integrated database retrieval system