Orrella dioscoreae: ODI_R1197
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Entry
ODI_R1197 CDS
T05133
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
odi
Orrella dioscoreae
Pathway
odi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODI_R1197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odi03019
]
ODI_R1197
03016 Transfer RNA biogenesis [BR:
odi03016
]
ODI_R1197
Enzymes [BR:
odi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ODI_R1197
Messenger RNA biogenesis [BR:
odi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ODI_R1197
Transfer RNA biogenesis [BR:
odi03016
]
Prokaryotic type
tRNA degradation factors
ODI_R1197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
TMP-TENI
S1_RRP5
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
SOE48041
UniProt:
A0A1C3JYS5
LinkDB
All DBs
Position
I:1305808..1307964
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AA seq
718 aa
AA seq
DB search
MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIEDTVVLATVVAAKKPKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVIIHTLSV
NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYLDGQYVINPTASQLKDSQLNLVVA
GTETAVLMVESEARELSEEVMLGGVVFGHEQQQVVINTIHDLVAEAGKPEWNWQPAPRDE
SFIASVTAAAQEGLTAAYQIREKQARTTKLREVYADVQAKVAAQAPEGQKVDTVAVENVL
FDLEAKLVRGQILSGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLG
TKQDEQIIDALMGEYRDRFLMHYNMPPFATGETGRVGVPKRREIGHGRLAKRSLVPLLPA
PEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDQGKFAV
LTDILGDEDHLGDMDFKVAGTVNGITALQMDIKIQGITKEIMQVALAQARDGRLHILDKM
REALDGSRTELSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTIVI
SSADLDRAREAQRRITDLTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIANY
RIANINDVLKVGQALRVKVIEADEKGRLRLSVKAIGGIEAQGGAAAPAEAAPQGEPQA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaagtcagcaaatcgttccagtacggccagcacaccgtcgtgctggaaacg
ggcgaaatcgcccgtcaggcctctggcgccgtgctggtgtccatcgaggacaccgtggtg
ctggccaccgtcgttgccgccaagaagccgaagcctggccaggacttcttcccgctgacg
gtcgactacatcgaaaagacctacgccgccggccgtatccccggtggtttcttcaagcgc
gaaggcaagccttcggaaaaggaaaccctgacctcgcgcctgatcgatcgtccgctgcgt
ccgctgttccccgaagggttctacaacgacgtgcaggtgatcatccacacgctgtccgtc
aaccccgaaatcgaccccgacatcgccgccatgatcggcgcctcggctgccctggccatc
tcgggcatccccttcaacggcccgatcggcgccgcgcgcgtgggttacctggacggccag
tacgtcatcaaccccaccgcctcgcaactgaaggattcgcaactgaacctggtggtcgcc
ggcactgaaaccgccgtgctgatggtggagtcggaagcccgcgaactgtccgaggaagtg
atgctgggcggcgtggtcttcggccacgagcagcaacaggtcgtcatcaacaccatccat
gacctggttgccgaagccggcaagccggaatggaattggcagcccgcgccgcgcgacgag
tcgttcatcgcgtcggtgaccgccgctgcgcaggaaggcctgaccgccgcctatcaaatc
cgcgaaaagcaggcccgcaccaccaagctgcgtgaagtctacgccgacgtgcaggccaag
gtcgccgcccaggcgccggaaggccagaaggtcgacaccgtggccgtggaaaacgtcctg
ttcgacctggaagccaagctggtgcgtggccagatcctgtcgggcgagccccgcattgac
ggccgcgacacccgcaccgtgcgtcccatcagcgttcgcctgggcgtgctgccccgcgcg
cacggcagcgcgctcttcacccgtggtgaaacgcaggcgctggtcgttgccacgctgggc
accaagcaggacgagcagatcatcgacgcgctcatgggcgagtaccgtgaccgcttcctg
atgcactacaacatgcctcccttcgccaccggcgaaacgggtcgcgtgggcgtgcccaag
cgccgcgaaatcggccacggccgcctggccaagcgctcgctggtgccgctgctgccggcc
ccggaagatttccagtacaccatccgcctggtgtcggaaatcaccgaatccaacggctcg
tcgtcgatggcctcggtctgcggcggttcgctggccatgatggatgcgggcgtgccggtc
aaggatcacgtggcgggcgtcgccatgggcctgatcctggaccagggcaagttcgccgtg
ctgacggacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggcgggt
accgtcaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaa
atcatgcaggtcgcgctggcccaggcccgtgatggccgcctgcacatcctggacaagatg
cgtgaagccctcgatggttcgcgcaccgagctctcgacgttcgcgccgcgcatgctcagc
atgaagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccaccatccgc
gcgctgaccgaagaaaccggcacgcagatcgacatctcggatgacggcaccatcgtcatc
tcgagcgccgacctggatcgcgcccgcgaagcccagcgccgcatcaccgacctgaccgcc
gacgtcgaagtcggccaggtctatgacggctcggtgctgcgcctgctggactttggcgcc
atcgtgcaagtgctgccgggccgtgatggcctgctgcacatctcggagatcgccaactac
cgcatcgccaacatcaacgacgtgctgaaggtcggccaggccttgcgcgtcaaggtgatc
gaagccgatgaaaagggccgtctgcgcctgtcggtcaaggccatcggcggcatcgaagcc
cagggcggcgccgccgctccggccgaagccgcgccgcaaggcgaaccgcaagcctga
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