Orrella dioscoreae: ODI_R1303
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Entry
ODI_R1303 CDS
T05133
Name
(GenBank) Type IV secretion system protein VirD4
Organism
odi
Orrella dioscoreae
Pathway
odi03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
ODI_R1303
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TrwB_AAD_bind
TraG-D_C
Motif
Other DBs
NCBI-ProteinID:
SOE48214
UniProt:
A0A1C3K7J3
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Position
I:1432937..1434943
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AA seq
668 aa
AA seq
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MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGAPWFYFYGTPVYYPWKLFEW
WFFFDAYAPQVFDTGGMIAASSGLLAVVVAIAMSVWRSRQARKVTTYGSARWADAADIRK
AGLTQPAGVFLGQHDGHYLRHEGPEHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKG
ENWQITAGWRSRFSHCLLFNPTDASSAAYNPLLEVRRGAHEVRDVQNIADILVDPEGALE
KRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFLSDPASPFELTLHRMMTTKHLGDSQ
HPVVASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLISAEHPVS
LYLVVPPSDVSRTKPLIRLILNQIGRRLTESLDGSDGIQRRHKLLLMLDEFPALGRLDFF
ETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG
TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPTDEAVVMVSSVAPIKA
KKLRYFADANFKQRVIPPPAVAAGRYADVPPARPDDWSGLAIPAVPAAPATASADDLEAL
GSTDDGGPRRQPELSEAIAYAPEMDASTSDLSLLDDDDMPPVLSGQLDPALQRTARLASL
NPNDGIDL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctcagggcgtgttgttcgggcagatcgccgccgtgttcggcatcgtgatcgcc
ggtgtgtggggtgccacgcaatggacagccgccgcattgggctaccagctacgcctgggc
gcgccttggttctatttttacggcacgccggtctattacccgtggaagctgttcgagtgg
tggttcttcttcgacgcctacgcgccgcaggttttcgacaccggcggcatgatcgcggca
agcagcggcctgctggctgtggtggtcgccatcgccatgtcggtatggcgctcgcgccag
gcgcgcaaggtgacgacctatggctcggcccgttgggccgatgccgccgacattcgcaag
gccgggctgacgcagcctgctggcgtctttcttggtcagcatgacggccactatctgcgg
cacgaagggccggaacacgtcctgacctttgcgccgacgcgctccggcaagggcgtgggc
ctggtggttcctacgctgttgtcctggccggcatccgccgtcatccacgacatcaagggc
gagaactggcagatcaccgctggctggcgcagccgattcagccactgcctgctgttcaac
ccgacggatgccagttcggcagcctacaacccgctgctggaagtgcggcgcggcgcgcat
gaagtgcgcgacgtgcagaacatcgccgacatcctggtcgatcccgaaggcgcgctggag
aagcgtaatcactgggagaagaccagtcacgcgctgctggtcggggcgatcctgcatgtg
ctgtacgcgggggaagacaagacgctgcgcggcgtcgccaacttcctgtccgacccggcc
agcccattcgagctgaccttgcaccggatgatgacgaccaagcacctgggcgattcccag
catcccgtcgttgcatccgctgcccgcgaagtgctcaacaaatcggacaacgagcggtcg
ggcgtgctctccaccgccatgtcattcctggggctgtaccgcgaccccacggtggccgaa
gtcacctcgcgctgcgactggcgcatcgccgacctgatttctgccgagcacccggtatcg
ctctatctggtagtgccgccgtcggacgtttcgcgcaccaagccgctgatcaggctgatc
ctcaaccagatcggccggcggctcaccgaatcgctggatggcagtgacggcatccaacgc
cgccacaagctgctgctgatgctcgacgagttcccggcgctgggccgcttggacttcttc
gagacggcattggccttcatggccggttacggcattcgcagctttctgatcgcccaaagc
ctgaaccagatcgacaaggcatatgggcagaaccattcgattctggacaactgccatgtg
cgcgtgaccttcgccaccaacgacgaacgcacggccaaacgcatttctgaaacattgggc
acggccactgagttacgcgcccagcgcaactacgcaggccaccggcttgccccgtggctg
gggcacctgatggtgtcgcgccaagaaaccgcacggccactgctgacgccgggtgaagtg
atgcagttgccgaccgatgaggcggtggtgatggtgtccagtgttgcgccgatcaaggcg
aagaagctgcgctacttcgccgacgccaatttcaagcaacgggtaattccgccgcctgcg
gtggcggcaggccgctatgccgatgtgccgcctgcacgacctgacgactggagcgggctg
gcgatccctgcggttcctgcggcaccggccacggcatccgccgatgacctggaggccttg
ggttcgaccgacgacggcggcccacgccgccagcccgaactgtccgaagccatcgcctat
gcccccgagatggatgcctcgaccagcgacctgtcgctgcttgatgacgacgacatgccc
ccggtgctttccggccagctcgaccccgctctgcaacgcacggcgcggctggcatcgctg
aaccccaacgacggaatcgacttatga
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