Orrella dioscoreae: ODI_R1734
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Entry
ODI_R1734 CDS
T05133
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
odi
Orrella dioscoreae
Pathway
odi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODI_R1734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odi03019
]
ODI_R1734
03016 Transfer RNA biogenesis [BR:
odi03016
]
ODI_R1734
Enzymes [BR:
odi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ODI_R1734
Messenger RNA biogenesis [BR:
odi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ODI_R1734
Transfer RNA biogenesis [BR:
odi03016
]
Prokaryotic type
tRNA degradation factors
ODI_R1734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
SOE48926
UniProt:
A0A1C3K1X1
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All DBs
Position
I:1884233..1886593
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AA seq
786 aa
AA seq
DB search
MRDAGAPLEPAELAERMKLTRPGTLKGFERRLNAMERDGQLMPNRKGVLLLANKLDFVPG
KVLGHRDGFGFLVRDDGAGPDIFLSPREMQKVLHGDRVLVKPTGEYRGKPDGTIVEVIER
RTNKLVGRFLNERGLSIVVPEDQRIKHDILVPPGETGDAQHGQVVTVDIIEQPTRHSQPL
GRVSQVLGEIDDPGMEIEIAVRKFDVPVDFSEGALKQADRLPDVVRKSDLKDRIDLRDVP
FITIDGEDARDFDDAVYCEAIELGTGSRKRPAWRLLVAIADVSHYVQPGDHLDADAVERG
TSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLVLVCDMVIPASGAKAGTITAYQFYNAVIH
SHARTTYTQVWGALQQPEGPAARSLPGVLPHVQDLYELYQLLAQSRRTRGAIDFDTIETK
IVCNELGKIEQIAPYVRNDAHKLIEECMLAANTCAADFMARSKHPGLYRIHEGPTTERLQ
ALREFLRTAGLSLGGGEDPTAKDYLKLLEAARARPDYQLLQTMCLRSMQQAMYSPDNVGH
FGLAYDAYTHFTSPIRRYPDLLTHRVIKSLLQTRRYVPQVENHAVALAATAREQEHAVWE
RLGLLLSANERRADEASRDVEAWLKCWFVKERVGETFSGRVTGVASFGIFVTLETLHVEG
LVHVSELGGEYFQFNEALHELRGERTGMRYRLTDKVQVQVSRVDLEARRIEFRLVPGTSF
DALRRAAGRGEEPAPRRVKKAASAKPAPLRGTTAKERRAQAKKSAQQAARPAASPAGKKS
ASRKRR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggacgcgggcgcacctctcgagccggccgaactggccgagcgcatgaaactgacc
cgcccgggcaccttgaagggcttcgagcggcgcctgaacgccatggagcgtgacgggcaa
ctgatgcccaaccgcaagggcgtgctgctgctggcgaacaaactggacttcgtgcccggc
aaggtgctgggccaccgcgacggcttcggcttcctggtgcgcgacgacggcgccggtccc
gacatcttcctgtcgccgcgtgaaatgcagaaggtgctgcacggcgaccgcgtgctggtg
aagcccaccggcgaataccgcggcaagcccgacggcaccatcgtcgaggtgatcgagcgc
cgcaccaacaagctggtgggccgcttcctgaacgagcggggcctctccatcgtggtgccg
gaagaccagcgcatcaagcacgacatcctggtgccgcctggtgaaaccggcgatgcccag
catggccaggtcgtcaccgtcgacatcatcgagcagcccacccgccacagccagccgctg
ggccgcgtgtcgcaggtgctgggcgagatcgacgatcccggcatggaaatcgagatcgcc
gtgcgcaagttcgacgtgccggtcgatttctcggagggcgcgctgaagcaggccgaccgc
ctgcccgacgtcgtgcgcaagtccgacctgaaggaccgcatcgacctgcgcgacgtgccg
ttcatcaccatcgacggcgaggacgcgcgcgacttcgacgacgcggtctactgcgaagcc
atcgaactgggcactggctcgcgcaagcgcccggcctggcgcctgctggtggccatcgcc
gacgtcagccattacgtccagcctggcgaccacctcgatgccgacgccgtcgagcgcggc
accagcgtctatttcccgcgccgcgtcattccgatgctgccggaaaagctgtccaacggg
ctgtgctcgctgaatcccgacgtcgaccgcctggtgctggtctgcgacatggtgattcct
gcctcgggcgccaaggccggcacgatcacggcctaccagttctacaacgcggtcatccac
tcgcacgcccgcaccacctacacccaggtgtggggggcgctgcagcaacccgaggggccg
gcggcgcgttcgctgccgggcgtgttgccgcatgtgcaggatctgtatgaactctatcaa
ttgctggcgcaatcgcgccgcacgcgtggcgccatcgatttcgacaccatcgagacgaag
atcgtctgcaacgaactgggcaagatcgaacagatcgcgccttacgtccgcaacgatgcg
cataagctgatcgaggagtgcatgctggcggccaacacctgcgctgccgacttcatggcg
cgcagcaagcatccggggctctaccgcatccatgaaggaccgaccaccgagcgcctgcag
gcgctgcgcgagttcctgcgcaccgcgggcctgtcgctgggcggcggcgaggatcccacc
gccaaggattacctgaagctgctggaagccgcccgcgcgcggccggactaccagctgctg
cagaccatgtgcctgcgctcgatgcagcaggccatgtacagccccgacaacgtcgggcac
ttcggcctggcgtacgacgcctacacgcacttcacgtcgcccatccgccgctatcccgac
ctgctgacgcaccgcgtcatcaagtcgctgctgcagacgcgccgctatgtgccgcaggtg
gaaaaccacgccgtcgcgctggccgccacggcgcgcgagcaggagcatgccgtctgggaa
cgcctgggcctgctgctgtcggccaacgagcgccgcgccgacgaggcctcgcgcgatgtc
gaggcctggctcaagtgctggttcgtgaaggaacgcgtgggcgagaccttcagcggccgc
gtgacgggcgtggcaagcttcggcatcttcgtcacgctcgagacgctgcacgtcgaaggc
ctggtgcacgtgtccgagctgggcggcgaatacttccagttcaacgaggcgctgcacgaa
ctgcgtggcgagcgcaccggcatgcgctatcgcctgaccgacaaggtccaggtgcaagtg
tcgcgcgtggacctggaggcgcgccgcatcgagtttcgcctggtgcctggcacgagcttc
gacgccttgcgccgcgccgcgggccgcggcgaagagcccgcgccgcgccgcgtgaagaag
gcggcctccgccaagccggcgccgttgcgcggcaccacggccaaggagcgccgcgcccag
gccaagaagagcgcgcagcaggcggcgcgtccggcggcctcgccggcgggcaagaagtcc
gccagccgcaagcgcaggtaa
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