Orrella dioscoreae: ODI_R2716
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Entry
ODI_R2716 CDS
T05133
Name
(GenBank) Type IV secretion system protein VirD4
Organism
odi
Orrella dioscoreae
Pathway
odi03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
ODI_R2716
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Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TrwB_AAD_bind
TraG-D_C
Motif
Other DBs
NCBI-ProteinID:
SOE50452
UniProt:
A0A1C3JZN2
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Position
I:complement(2945770..2947767)
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AA seq
665 aa
AA seq
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MQGQGVLFGQIAAVFTIVIAGVWSATQWTAAALGHQLRLGSPWFDFFGTPVYHPWRLFEW
WFFFDAYAPHVFDIGGAIAGGSGLLAVVVAIAMSVWRSRQSRLVTTYGSARWADTADIRK
AGLTQPAGVFLGLHRDQYLRHEGPEHVLTFAPTRSGKGVGLVVPTLLSWPASVVVHDIKG
ENWTLTAGWRSRFSHCLLFNPTDAKSAAYNPLLEVRRGAHEVRDVQNVADILVDPDGALE
RRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFLSDPACPFELTLHRMMTTKHLGEAP
HPVVASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLISAKHPVS
LYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIARRHKLLLMLDEFPALGRLDFF
ESALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFSTNDERTAKRISETLG
TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSLPPIKA
KKLRYYADANFKQRVLSPPALATGRYADAPPARPDDWSGLAIPAVPAAPATAFADDLGGA
DDGGPRRQPELSETVAYDPEPDAHATDLALLDDDDLPMPLPGQLDPAMQRTARLASLNPN
DGIDL
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtcagggcgtgctgttcgggcagatcgccgctgttttcaccatcgtgatcgcc
ggcgtatggagtgcaacgcaatggacagcggcagcactcggacatcaactacgccttggc
tcgccctggttcgacttctttggcacgccggtctatcacccctggcggctgtttgaatgg
tggtttttcttcgatgcctacgcgccgcatgtcttcgacataggcggtgcgattgcgggc
ggcagcggccttctggccgtggtggtcgccatcgccatgtcggtatggcgctcgcgacag
tcgcgcctcgtcacgacctacggttcggcgcgctgggctgataccgccgacatccgcaag
gctgggctgacccagccggccggggtcttcctcggcctgcaccgcgaccagtacctgcgg
cacgaaggcccggaacacgtcttgactttcgcacccactcgcagcggcaagggcgtgggg
ctggtggtgcccactttgttgagctggccggcgtccgtcgtcgtccacgacatcaagggc
gagaactggacgcttaccgccggctggcgttcgcggttcagccattgcctgctgttcaac
cccaccgatgcgaagtcggcagcctacaacccgctgctggaagtccggcgcggcgcgcat
gaagtgcgcgacgtgcagaacgtggcggacattctggtcgatcccgatggcgcgctcgaa
cgcaggaatcattgggaaaagaccagtcacgcgctgctggtcggcgccatcctgcatgtg
ctctacgcgggcgaggacaagacgctgcgcggcgtcgccaacttcctcagcgatccggct
tgcccgttcgagctgacgttgcatcggatgatgacgacgaagcacctgggcgaagcgccg
catcccgtggtcgcatctgctgcgcgcgaggtgctcaacaagtcggacaacgagcgttcc
ggcgtgttgagcaccgccatgtcgttcctcggcctgtaccgcgatcccacggtggccgaa
gtcacgtcacgctgcgactggcgcatcgccgacctgatttctgccaagcatcccgtatcg
ctgtatctagtggtgccgccttcggacatcagccgcaccaagccgctgatccggctgatc
ctcaaccagatcgggcggcggctcaccgaatcgcttgacggctccgacggcatcgcccgc
cgccacaagctgctactgatgctcgatgagtttccggcgctgggccgcctggacttcttc
gagtccgcgcttgccttcatggccggctacggcatacgcagctttctcatcgctcagagc
ctgaaccagatcgacaaggcgtatgggcagaaccattcgattctcgacaactgccacgtc
cgcgtgacgttttcgacaaacgacgaacgcacggcgaaaaggatttcggaaaccctgggc
acggccactgaactgcgcgcgcagcgcaactatgccggccacagattggccccgtggctc
gggcacctgatggtgtcgcggcaggaaaccgcgcgtccgctgcttacccctggcgaggtg
atgcagcttccgcccgacgagtcggtggtgatggtgtccagcctgccaccgatcaaggcg
aagaagctgcgctactacgccgacgccaacttcaagcagcgcgtgctgtcgccgcctgcg
ctcgcaaccgggcgctatgccgatgcgccgccggcccgacccgacgattggagcggcctg
gcgattcccgccgtacccgccgcgccagccacggcattcgccgatgaccttggcggcgcc
gacgacggcggcccgcgccgtcagcccgaactgtccgaaaccgtcgcctacgaccctgag
ccggacgcgcacgcgaccgacctggcgctgctcgatgacgacgacctgccgatgccgctt
cccggccagctcgacccggccatgcagcgcacggcccggctggcatcgctgaaccccaac
gacggaatcgacctatga
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