Orrella dioscoreae: ODI_R3246
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Entry
ODI_R3246 CDS
T05133
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
odi
Orrella dioscoreae
Pathway
odi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODI_R3246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
odi03019
]
ODI_R3246
03400 DNA repair and recombination proteins [BR:
odi03400
]
ODI_R3246
Enzymes [BR:
odi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ODI_R3246
Messenger RNA biogenesis [BR:
odi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ODI_R3246
DNA repair and recombination proteins [BR:
odi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ODI_R3246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
SOE51169
UniProt:
A0A1C3K0I2
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All DBs
Position
I:complement(3516731..3518557)
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AA seq
608 aa
AA seq
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MSDTRALEVLQRVFGYESFRGEQQAIVQQVIDGGDALVLMPTGGGKSLCYQVPALVRPGT
GIVVSPLIALMQDQVDALTELGVRAAFLNSTQDWNATREVEQAFLAGELDLLYVAPERLV
TDRCLSLLERGRIALFAIDEAHCVSQWGHDFRPEYLQLSMLHEQWPDVPRIALTATATDV
TRTEIAQRLALDDARHFIASFDRPNIRYRIVEKNDVRRQLLDFLRTEHAGDAGVVYCLSR
SRVEDTAAYLSAQGISALPYHAGLPAPVRAANQSRFLREDGIVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPANAWLAYGLQDVVQQRRMIDDSPGDDAFRRRLG
AQLDAMLGLCETVECRRQRLLAYFGQRITPCGNCDTCLEPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKKNERTAQHGHETLSVFGVGADLSDTAWRSVLRQLLAQGLL
TVDTEGYGTLALTEGSRAVLKGERTLMLRRESERAAARNRAATPRSKPAVADLPAEAQAL
FESLRAWRGDVARNHGVPAYVIFHDATLREIALARPESLEDLGHVSGVGARKLEAYGDDI
LECVAQAA
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacccgtgccctggaagtcctgcagcgggtcttcggctatgaatcctttcgc
ggcgagcagcaggccatcgtccagcaggtcatcgatggcggcgacgccctcgtgctcatg
cccacgggtggcggcaagtccctgtgctatcaggtgcctgccctggtgcggcccggcacc
ggcatcgtggtgtcgcccctcatcgccctcatgcaggaccaggtcgacgcgctgaccgaa
ctcggcgtgcgcgcggctttcctgaattccacccaggactggaatgccacccgcgaggtg
gagcaagccttcctggcgggcgagctggacctgctgtacgtcgcgcccgaacgcctggtc
accgaccgctgcctgtcgctgctcgagcgcggccgcatcgcgcttttcgccattgacgag
gcgcactgcgtgtcgcaatgggggcacgacttccgtccggagtacctgcagctgtccatg
ctgcacgagcagtggcccgacgtgccgcgcatcgccctcacggccacggccaccgacgtc
acgcgcaccgagatcgcgcagcgcctggcgctggacgacgcgcggcatttcatcgccagc
ttcgatcgtcccaacatccgctaccgcatcgtcgagaagaacgacgtgcgccgccagttg
ctggatttcctgcgcaccgaacacgcgggcgatgccggcgtggtgtattgcctctcgcgt
tcccgcgtggaagacaccgccgcctatctcagcgcgcagggcatctcggccttgccgtac
cacgcgggcctgcccgcgccggtgcgcgcggccaaccagtcgcgcttcctgcgcgaagac
ggcatcgtcatggtggccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtggcgcacatcgacctgccgaagtcggtcgagggctactaccaggaaaccggccgc
gccggccgcgatggcctgccggccaacgcctggctggcctatggcctgcaggacgtcgtg
cagcagcgccgcatgatcgacgactcgccgggcgacgatgccttccgccgccgcctgggg
gcgcagctggacgccatgctgggcctgtgcgagaccgtggagtgccggcgccagcgcctg
ctggcctatttcgggcagcggatcacgccttgcggcaactgcgacacctgccttgaaccg
ccgcaggcctgggatggcacggtggccgcgcagaaagtgctgtcggcggtgtatcgcctg
tggaaggagcgcgggcagcgttacggcgcaggccacatcatcgatatcctgcgcggaaaa
aaaaacgaacgcacggcgcaacacggccatgaaaccctgagcgtcttcggcgtgggcgcg
gacctgtccgacaccgcctggcgcagcgtgttgcggcagctgctggcccagggcctgctc
accgtggataccgaaggctatggcacgctggcgctgactgaaggcagccgcgcggtgctc
aagggcgaacgcacgctgatgttgcgccgcgagtccgagcgcgccgcggcgcgcaaccgg
gcggccacgccgcgcagcaagccggcggtcgccgacctgcccgccgaggcccaggccctg
ttcgagtccctgcgcgcctggcgcggcgacgtcgcgcgcaatcacggcgtgcccgcctac
gtcatcttccacgacgccaccttgcgcgaaatcgcgctggcgcggcccgaaagcctggaa
gacctcgggcacgtcagcggcgtgggggcgcgcaagctggaggcctacggcgacgacatc
ctggagtgcgtggcgcaggcggcctga
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