Orrella dioscoreae: ODI_R4063
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Entry
ODI_R4063 CDS
T05133
Name
(GenBank) Penicillin-binding protein 2 (PBP-2)
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
odi
Orrella dioscoreae
Pathway
odi00550
Peptidoglycan biosynthesis
odi01100
Metabolic pathways
odi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
ODI_R4063
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
ODI_R4063
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
odi01011
]
ODI_R4063
Enzymes [BR:
odi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
ODI_R4063
Peptidoglycan biosynthesis and degradation proteins [BR:
odi01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
ODI_R4063
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
SOE52298
UniProt:
A0A1C3JZ81
LinkDB
All DBs
Position
I:complement(4450527..4452635)
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AA seq
702 aa
AA seq
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MFEFKQTGQQQKQRFRLRAWVAAVFALACFGVLVARLWHLQVDRYEGLAARADRNRIAVV
PIPPRRGEIVDRNGEVLARNYRAYTLEVVPAMAGPLDELFKSLQGLVPVTPADERRFRRR
VSESSRYASVMLRNNLTEAEASGFAAHSFLYPGVSLKARWVREYPQGASAGHVVGYIGRI
SETDVEMLEEEDRLGNYRGTEVIGKKGLEKTWESVLHGRTGLEEVEVTATGRPMRTLRRI
DPVPGSKLVLSLDMGLQRVAEEAFGNRRGALVAIEPATGDVLAFVSQPSFDPNLFVDGID
VDNWKLLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRAGDRFYDPGFYEFGG
QRFRNAGSAVYGMTDMTRALVVSSDTYFYSLGPEIGVNALHDFMKPFGFGQLTGIDLEGE
RRGILPSTDWKRAAYKSREQQRWYAGETISVAVGQGYNSFTLLQLAQATSVLANDGVYMK
PHLVRGVLASGSVQVEPTVSEPSYKVPLKQANVDIIKKALVEVVNSGTARRAFAGAPYQA
AGKTGTAQVYSLRGGQYRASQIDERLRDHALFMSFAPADKPTIAIALIVENGGWGASVAA
PLARKVFDYWLARDGKGGANDVPGAAPPGDMQGEPGPDEDASDHAVIEEDADAPPEIAPA
PAMGNTPPPTTDTDRAPPAPATKPRVPPVVKAAGSAAGNIAP
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaattcaagcagaccggccagcagcagaaacagcgattcaggctgcgcgcctgg
gtcgctgccgtgttcgcgctggcctgcttcggcgtgctggtggcgcgcctgtggcatctg
caggtcgaccgctacgaaggcctggcggcccgcgccgaccgcaatcgcatcgccgtggtg
ccgattccgccgcgtcgcggcgagatcgtcgaccgcaatggcgaggtgctggcgcgcaac
tatcgcgcctatacgcttgaggtggtgcccgccatggcggggcccctggacgagctcttc
aagtccttgcagggtctggtgccggtgaccccggcggatgagcggcgctttcgccgccgc
gtatccgagtccagccgctatgccagcgtcatgctgcgcaacaacctcaccgaggccgag
gcctcgggcttcgccgcccattccttcctgtacccgggcgtgtcgctgaaggcccgctgg
gtgcgcgagtatccgcaaggcgcctccgcggggcacgtcgtgggatatatcggccgcatc
tccgaaaccgacgtcgagatgctcgaggaagaagacaggctgggcaattaccgcggcacc
gaggtcatcggcaagaagggcctggagaagacctgggagagcgttctgcacggccgcacg
ggcctggaagaggtcgaggtcacggccactggcaggcccatgcgcacgctgcggcgcatc
gaccccgtgccgggatccaagctggtgctgtcgctggacatgggcttgcagcgggtggcc
gaggaagcgttcggcaatcgccgcggggcgctggtcgccatcgagcccgccacgggcgat
gtgctggccttcgtgtcgcagccctcgttcgatccgaacctgttcgtcgacggcatcgac
gtcgacaactggaagctgctgaacgagtcgccggaccatccgctgatcaaccggccgctg
tacggcacctatcccatcgggtccacgtacaagcccttcgtcgcgctggctgcgctggag
ctgggcaagcgccgcgcgggggatcgcttctatgacccgggcttctacgagttcgggggg
cagcgcttccgcaatgccgggtccgccgtgtatggcatgacggacatgacgcgcgcgctg
gtggtgtcgtccgatacctacttctattcgctgggccccgagatcggcgtgaacgccttg
cacgatttcatgaagcctttcggcttcggccagctgacgggcatcgacctggaaggcgag
cgccgcggcatcctgccctccaccgactggaagcgcgccgcctacaagagccgcgagcag
cagcgctggtacgcgggcgagacgatttccgtggccgtgggccagggctacaactcgttc
accttgctgcagctggcgcaggccacctccgtgctggccaatgacggcgtctacatgaag
ccgcacctggtgcggggcgtgctggcctcggggtcggtacaggtcgagcccacggtgtcc
gagccttcctacaaggtgccgctgaagcaggccaacgtcgacatcatcaagaaggcgctg
gtggaggtcgtgaactcaggcacggcgcgccgtgccttcgcgggcgcgccgtatcaagcc
gccggcaagaccggcacggcacaggtctacagcctgcggggcgggcagtatcgcgccagc
cagatcgacgaacggctgcgcgaccatgcgctcttcatgtccttcgcgcctgccgacaag
cccaccatcgccatcgcgctcatcgtcgagaatggcggctggggcgccagcgtggcggcg
ccgctcgcgcgcaaggtgttcgactactggctggcgcgcgacggcaagggcggcgccaat
gacgtgccgggcgcggcgccgccgggcgacatgcagggcgagccaggacccgacgaggat
gcctccgaccacgcggtgatcgaggaggacgccgacgcgccgcccgagatcgcgccggcg
cccgccatgggcaatacgccgccgcccaccaccgataccgatcgtgcgccgcccgcgccc
gccaccaagccgcgcgtgccgccggtcgtgaaggcagcaggcagcgcggcaggaaatatc
gcgccgtga
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