Orrella dioscoreae: ODI_R4108
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Entry
ODI_R4108 CDS
T05133
Name
(GenBank) Helicase PriA essential for oriC/DnaA-independent DNA replication
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
odi
Orrella dioscoreae
Pathway
odi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ODI_R4108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
odi03400
]
ODI_R4108
Enzymes [BR:
odi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ODI_R4108
DNA repair and recombination proteins [BR:
odi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ODI_R4108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
ResIII
Helicase_C
AAA_30
Zn_ribbon_PriA
AAA_16
AAA_22
nSTAND_NTPase5
zf-IS66
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
SOE52356
UniProt:
A0A1C3K5H4
LinkDB
All DBs
Position
I:complement(4511116..4513176)
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AA seq
686 aa
AA seq
DB search
MVPPAAWVRVVLDVPLPGPFDYRHVAPVEPGTRVIVPFGRRKLIGVVVDNPAEPGYEPSQ
IKDVEQVLDDLPPLSERWMRLARFAADYYQRPLGEVMLPALPGPLRKVSAYQGKRASGGP
VARQARRKRTARDDAAADQPPTLNEAQQAAVDAIVGAPAFHAFLLHGVTGSGKTEVYLRA
AEQVLARGRQVLMLVPEINLTPQFEAALRARLERVAGADGLAVLHSGLSEGERLQAWTRA
VDGRARIVLGTRLAVFAPLEDLGLIVVDEEHDTSYKQQDGLRYSARDLAVWRGRDAAAAV
VLGSATPALETWYHATRGHYTRLGLPTRARAASLPAVRLVDTRRLPMENGMSPQLLDGIA
DRLARGEQSLVFLNRRGYSPALHCASCGWVSQCTRCTAFTVLHRGSHGMHRLQCHHCGYQ
ARVPRACPDCGDQDLKPMGRGTQRVEEYLAEKFPAARISRIDADSTRRKGSAQALFAQVH
AGEVDILVGTQMVAKGHDFANLTLVGVLNADSMLFSQDFRAPERLFAQLMQVSGRAGRHG
GQGEVLIQTGYPEQSVYQSLLRHDYEGFARHALAERESVGLPPYAFQALLSAEARELAQA
IDFLQRARDEAENVLAEAGLPGGVTLYDPVPLRVVRVANVERAQLLLESASRPALLAFLR
RWVGVLPALAADGRARWLLEVDPLEI
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgcccgcggcgtgggtgcgcgtggtgctggatgtgcccttgccggggccgttc
gattaccgccatgtggcgccggtcgagccggggacgcgggtgatcgtgcctttcgggcgg
cgcaaactgatcggcgtggtggtggacaatccggctgaaccgggatacgagcccagccag
atcaaggatgtggagcaggtgctggacgacctgccgccgctgtccgagcgctggatgcgc
ctggcgcggttcgcggcggattattaccagcgcccgctgggcgaggtcatgctgccggcc
ttgccgggaccgctgcgcaaggtctcggcctaccagggcaagcgggcctcgggcgggccg
gtggcgcgccaggccaggcgcaagcgcacggcgcgcgacgatgccgcggctgaccagccg
cccacgctgaacgaggcgcagcaggcggcggtggatgccatcgtcggcgcgccggccttc
cacgccttcctgctgcacggcgtcaccggcagcggcaagaccgaggtctacctgcgcgcc
gccgaacaggtgctggcgcgcggccgccaggtgctgatgctggtgccggaaatcaacctg
acgccgcagttcgaggctgccttgcgggcgcgcctcgaacgggtcgcaggcgcggacgga
ctggccgtgctgcacagcggcctgtcggagggcgagcgcttgcaggcgtggacgcgggcg
gtcgatgggcgtgcgcgcatcgtgctgggcacgcgcctggctgtgtttgcgccgctggaa
gacctgggcctcatcgtcgtggacgaagagcacgacacctcgtacaagcagcaggacggc
ctgcgctattccgcgcgcgacctggccgtctggcgcggccgcgatgcggctgccgccgtc
gtgctgggctcggccacgcccgcgctggagacctggtatcacgccacgcgcggccactac
acgcggctcggcctgccgacgcgcgcgcgcgcggccagcctgccggcggtcaggctggtg
gatacgcgccggctgccgatggaaaacggcatgtcgccgcaactgctggatggcattgcc
gaccgcctggcgcgcggcgagcaatcgctggtgttcctgaaccggcgcggctattcgccc
gccctgcattgcgcctcctgcggctgggtcagccaatgcacgcgctgtacggcattcacg
gtgctgcatcgcggctcgcacggcatgcaccgcctgcaatgccaccattgcggctaccag
gcgcgcgtgccgcgcgcctgccccgactgcggcgaccaggacttgaagcccatggggcgg
ggcacgcaacgggtcgaggaatacctggcagagaaattccccgctgcccgcatttcccgc
atcgatgccgacagcacccgccgcaagggcagcgcgcaggccttgttcgcccaggtgcat
gccggtgaggtcgacatcctggtcggcacgcagatggtggccaagggccatgacttcgcc
aacctgacgctggtgggcgtgctgaacgccgattccatgttgttctcgcaggacttccgg
gctccggaacgcctgttcgcccagctcatgcaggtgtcggggcgcgctgggcgccacggt
ggccagggtgaagtcctgatccagacgggctatccggaacaatccgtctatcaatccttg
ctgcgtcacgattacgaaggcttcgcccggcatgcgctggccgagcgcgaaagtgtcggc
ctgccgccctatgccttccaggcgctgctgtccgcggaagcccgcgagctggcgcaggca
atcgatttcctgcagcgtgcgcgcgacgaggctgaaaatgtccttgccgaggcgggcctg
ccgggcggcgtgacgctatatgatccagtgccgctgcgcgtcgtccgcgtggccaatgtc
gagcgggcccaattgctgctggaaagcgcaagccgccccgccctgctggcgttcctgcgc
cgctgggtgggcgtgttgcccgcgctggctgctgacggccgcgcacgctggctgcttgaa
gtggatccgctggagatctga
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