Ostrea edulis (European flat oyster): 125645711
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Entry
125645711 CDS
T09123
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03030
DNA replication
oed03410
Base excision repair
oed03420
Nucleotide excision repair
oed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125645711
03410 Base excision repair
125645711
03420 Nucleotide excision repair
125645711
03430 Mismatch repair
125645711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oed03032
]
125645711
03400 DNA repair and recombination proteins [BR:
oed03400
]
125645711
DNA replication proteins [BR:
oed03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125645711
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125645711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
AAA_30
PTCB-BRCT
AAA_14
Rad17
BRCT_2
RuvB_N
AAA_16
AAA_33
nSTAND3
AAA_19
AAA_5
Motif
Other DBs
NCBI-GeneID:
125645711
NCBI-ProteinID:
XP_048727451
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Position
6:complement(88594644..88651135)
Genome browser
AA seq
1166 aa
AA seq
DB search
MDIRNFFGAKTHKKSDGGKESTVKKTEESKSKGTTKKKESVKSSSQSNSTKRKAAQDSSL
KKQSQKNSNRQKETEKKKIYVLDSDSESELYTSPPTVKGKPSKDENKTNSTKKAGKSQPR
ESSNDKVNRKKGKGKSQPHESSDDEVQQKKGKRKRQQISSEDDEEPAISKQKRKSKRRLD
SDSEEDVEEVKQKDRHGRGKKSKTHCIDSDEETPRKTTLDAFLKSPSPKKQVEMKTKSIT
KTPVSVQDFFGGGSVSRSDKKVAAKRTQEESRVSPVVYDVEMHEDDDFQKTLDMADGSKA
KRAKRNAEEKSSSLNGGESLASKLAARVQSLDDSDVIPDTPSSEKGQFTKISERKDSPKK
IERNKVAPRTSPKKPSPVKFTPKKTIVSSEAAVTPKSEETSKPGAKASPTKVSPDTPSLS
KKGSMYRSYLNREGPQALGSKEIPKGGENCLESLTFVITGVLESLERDEAKSLIERYGGR
VTGSISKKTSYIVIGRDCGESKLNKAKSLGTKQIDEDGLLNLIKTLPGKRSKYEVKVEEQ
MKKESSISKKTEPAKPPAKSLVKIFPANTTIESQDTVPRMSQANDRSGGTTKSTEESLMW
VDKYKPTQLKQIIGQSGDKSNAKKLLHWLTNWHKNRAAGIKPQGKFFSKGDDGSGFKAAL
LSGPPGIGKTTTSTLVCKEAGFSYVELNASDTRSKKSLKEVVAESLNNTTIVDYIEGTNS
STMGRKHCLLMDEVDGMAGNEDRGGLQELVALIKSSQIPIICMCNDRNHQKMRTLSNHCF
DLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWTSGEKCL
TYDQAKKDSTNAKKDFKLGPFDVCRKVFVGGDETARMTLNDKSDLYFHDYNIAPLFVQEN
YIHVLPYAAKGNVSRHLSLLARAADSVCDGDMVDRCIRQSQSWSLLPTAAMYASVIPGEY
MRGNLPQMVGFPSWLGKNSTTGKTDRLLQELRTHMSLPTSANKLSLNLDYLPYMRKFLTT
PLVMKENEGIPEVIDLMDKYDIIKEDFDNILEITKWQNSDDPMSKLSSKTKAAFTRTYNK
EVHLTPYATGTLTKKGRGGGAPVTEDFDVEGEDEGAAITPESDEDGNEDLEMDSMIKSKK
KSKGKEKEQKETSSKGKGKGKGKAKS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggaacttttttggagcaaaaacgcacaagaaatcagatggtggaaaagaa
tcaaccgtaaagaaaactgaagagtcgaaaagcaaaggtacaaccaagaaaaaggagagt
gtcaagtcaagcagccagagtaacagtactaaacgtaaggctgcccaggacagttccctt
aaaaaacagtcccagaaaaattctaatagacagaaggagacggagaaaaagaagatttat
gtgctagacagtgattcagaatcagaactgtacacaagtccaccgactgtgaaaggaaaa
ccgagcaaagatgaaaataaaacaaacagtaccaagaaagcgggaaaatctcaacctcgg
gagagtagcaatgacaaagttaatcgaaagaaaggcaaaggaaaatctcagccccatgag
agtagtgatgatgaagttcagcaaaagaaaggcaaacgaaaacgacaacagataagtagt
gaggatgatgaagaaccagcaatttcaaaacaaaaacgcaagtcaaagagaagactagac
tcggattctgaggaagacgttgaagaagttaaacaaaaggaccgtcatggtcgtggtaaa
aagtccaaaactcactgtattgattcagatgaagaaaccccaagaaagactacactagat
gcatttttaaaatcaccaagtcccaagaaacaagtagagatgaagacgaagagtattaca
aagacccctgtaagtgtgcaggattttttcgggggtggatccgtgtctcgatcagacaaa
aaggtggctgccaagcgcacacaggaagagtctcgcgtatcacctgtggtgtatgatgtc
gagatgcacgaagacgacgatttccagaaaaccttggacatggcagacggaagcaaagct
aagagagcaaagcgcaatgcagaagagaaatcatccagtttgaatggaggtgagagtctg
gcgagtaagcttgcagctagggtacagtctctcgatgacagtgatgtgattcctgataca
cccagctcagaaaagggtcaatttacaaagatttcagagagaaaagactcaccgaagaaa
attgaaagaaataaagtggctcctagaacgtccccaaagaaaccttcccctgtcaaattc
acccccaaaaagaccattgtttcaagtgaggctgcagtaacacccaagtcagaagaaacc
agcaaacctggtgcaaaggctagccccaccaaagtttccccagatacaccgtccctatcc
aagaagggcagcatgtaccgcagctacctaaaccgagaaggtccgcaggcgctgggctcc
aaggaaatacccaagggaggagaaaactgcctggagtccttgacatttgtcattactggt
gtattggaatcattggagcgtgacgaagccaaaagtctgattgagagatacggggggcga
gtcacagggagcatcagcaagaagactagctatatagtgattggccgcgactgcggggaa
agcaaactaaacaaggccaaaagcttaggcacaaagcagatcgatgaggatgggttgctg
aacttaataaaaacacttcccgggaaacgatccaaatatgaagtaaaagtagaggagcag
atgaaaaaggaatcatctatctcaaagaagacagagccagcgaaacctcctgcaaaatct
ctagtgaaaatttttccagcaaatacaaccatagaatcccaggataccgtgcctcgcatg
tcccaagctaacgatcgatcaggcggaaccaccaaatctacggaggagagtttgatgtgg
gtggataagtacaaacctactcagctgaagcagatcatcggacagtcaggggataagagt
aatgcaaagaaacttctgcattggttaaccaactggcacaaaaatcgggcagcgggaatc
aaaccacaaggtaaatttttcagtaagggtgacgatgggtctggatttaaggcagccttg
ctctcaggtcccccgggcataggaaagaccacgacatcgacgttagtttgtaaggaggca
ggtttctcctatgtagagttaaatgcatcagacacacgatcaaagaagagtttgaaggag
gtggtggcagaatctctgaacaacacaacgatagtagactatattgaaggtacaaacagc
agtactatgggcaggaagcattgtctgttgatggatgaggtggatgggatggcaggaaac
gaggaccgcggaggtctgcaggagttagtggccctgatcaagtcctcccagatccccatc
atctgtatgtgtaacgacaggaatcaccagaagatgaggactctgtctaaccattgcttc
gatctccgcttccagaggccacgggtcgagcaaatcaagggggctatgatgtctgtagct
tttaaagaaggcttgaaaattccacctccagccatgaatgaaatcattttggcagccaac
caagatattcgacaggtacttcataatttgtcgatgtggacgtcaggagaaaaatgtttg
acgtacgatcaggccaagaaagactccacaaatgccaaaaaagatttcaaattgggtccc
ttcgatgtttgccgtaaagtatttgttggcggagatgaaactgctcgcatgacattgaat
gacaagtcagatttgtatttccatgactacaacatcgctccgctctttgtccaggaaaac
tacatccatgttcttccatatgctgcaaagggaaatgtaagccgccatttgtccttgctg
gccagggctgcggacagcgtgtgtgatggcgacatggtggaccgatgtatccgacaaagt
cagtcctggagcctgctgcccaccgcggcaatgtatgcaagtgtgataccaggagaatac
atgagaggcaatctgccacaaatggttggttttccaagctggcttggcaagaattctacc
accggtaaaacagaccgcttgctgcaggagctcagaacccacatgtctctgccgacatca
gccaacaaattaagtctaaacctggattacctcccctacatgagaaagttcctgacgaca
cctttggtgatgaaggagaacgagggaataccagaggtcatagatttgatggacaaatat
gacatcatcaaagaagactttgacaacatcctagagattacaaaatggcagaacagtgat
gatccaatgtcaaagcttagctctaagacaaaggctgcctttacacgtacatacaataag
gaggtccacttgaccccctatgctactggtaccctgactaagaaaggcagagggggcggg
gcacctgttacagaggattttgatgtagagggtgaggatgaaggagcagcaatcacccca
gagagtgacgaggatggaaacgaggacctagaaatggactccatgatcaagtccaaaaag
aagtccaaaggaaaggaaaaggaacagaaggaaacatcatcaaagggaaaaggaaaaggg
aagggaaaagcgaaaagctaa
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