Ostrea edulis (European flat oyster): 125646211
Help
Entry
125646211 CDS
T09123
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X2
KO
K08737
DNA mismatch repair protein MSH6
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125646211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oed03400
]
125646211
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125646211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Tmemb_cc2
Motif
Other DBs
NCBI-GeneID:
125646211
NCBI-ProteinID:
XP_048728354
LinkDB
All DBs
Position
6:complement(2670750..2714956)
Genome browser
AA seq
1363 aa
AA seq
DB search
MGPKQTPSKQGNTLFAYFSKSPVPTKSSQSNVNGSDVLSQKKSPNKPDGATPAKQPKKLV
EVQSFKEGDIVWSKLSGYPWWPSLVCSHPTENTHVKQGKNPQFHVQFFDTPPTRSWIKAK
DIIPFHGADHEDYKKGGKCYSLNPKVRKGTEEADKALKLSVEERLKLVVDLQPSSDEEEE
EDEDDENMEINDGNESEEIEADNSKENKESEVKSKHRTSRRPAKRRRVVIASDSGESDDE
FKPHSEESSDDEASSGVNEDDISEPESVSEVDSPVKKSKKSEAPSKKRKKPEKNTKPWRP
SKGGNADSDEDPAKEAVSPPTNLSSPSTNLSSPSTSRPSSSTPLVGVKTKSKLASFAASD
QDIKPVRGPEQESNFPHLKLDFLQPDKIKDAKKRNKDHEEYDPKTLYLPDSFLRQQTPAM
RQWWELKSKHFDAVLFFKMGKFYELFHMDAAVGVNELGLIYMKGDHAHSGFPEIAYSRYA
DALIAKGYKVARIEQTETPDMMTERVKNMGVPATKFDKVVKREICRITTQGTKTFNMMDG
DITEASSSYLLALCEKDTGQFGQSIYGVCFVDTTIGKFQLGQFTDDRYCSRLRTLIAHFT
PVQVLMPRGRVSEKTTSLIKNNLSSVLKEYLRPDTEFWDSSKTLKVLAEEEYLKAEDEAV
WPDCLKKMMSDGDTLGVCAADDYTLAVSSLGAVIWYLQYCLMDDELLSMKNFEEYIPVDS
GKITSEEKSTFKKNQHMVLDGLTLRNLDVADMYGAQEGTLLSTLNLCCTPFGNRLFKQWL
CAPLCNPASINDRLNAVEDLNAVPEVMSEVTEMIRKLPDLERILSKFHSLGSAARSKKHP
DSRAIFFDEAKYSKKKIEDFLSTIEGFKVAQKVAKKFQSHVDDFTSNLLKWTMTTDSADS
KGLFPDLKEELQFFDNAFDHSKAKKDGVILPNKGVSPEYDSAKVDLKAAERGLEEYLDRQ
RQRLGCRTLTYWGSGKNRYQIEVPESILKRVPDEYNLMSSKKGTKRYRTKEIEDQLVDLT
EAEERKDAALKDTMRRLFYSFDERYKLWDTALQCLSVLDVLMSLAKYVGSADGVTCRPEI
LEPTSDTEPFIEIREARHPCVTRTFGGGDFIPNDTVIGIADELDTEEEGEKNDNSKIVLV
TGPNMGGKSTLMRQVGLITIMAQMGCYVPAEKCRLTPIDRVFTRLGASDRIMSGESTFFV
ELSETSAILQHATTHSLVLIDELGRGTATYDGTAIACAVVKELSENICCRTLFSTHYHSL
VEEFSHDPNIRLGHMSCMVEDEGDPTEETITFLYKFAKGACPKSYGFNVARLADIPDEVV
KEAREKAKEFEMAVERKKLFRSLFKDDSIENIKRIQQLLPGVL
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgggacctaaacaaacgccttccaagcagggaaacacactgtttgcatacttttccaaa
agtccagtaccaacgaaaagcagtcagtcgaatgtgaatggatcagatgtgctgtcacag
aagaaatcaccaaacaaaccagacggcgcaacacctgcgaaacagccgaaaaaactagtc
gaagttcaaagtttcaaagaaggagacatcgtttggagtaaattgtctggatatccatgg
tggccatcacttgtctgctcacatccgacagaaaatactcacgtaaagcagggcaagaac
ccacagtttcatgttcagttctttgacacgcccccaacaagatcatggattaaagcaaag
gatatcatacctttccatggtgcagaccatgaggactataagaaaggtggcaagtgctac
tccctaaaccccaaagtgaggaagggaacagaggaggctgataaagccctgaagttgtcg
gtggaggagaggctgaagctggtggtggatctacagccgtccagcgacgaggaggaggag
gaggatgaggatgacgagaacatggagattaatgatggtaatgaaagtgaagaaattgag
gccgacaacagtaaagaaaataaagagagtgaagtgaaatccaaacatagaacaagtaga
cggccggcaaagagaaggcgtgttgtaatcgccagtgacagcggagaatcagatgatgaa
ttcaagcctcactcggaggagtcatcagatgacgaggccagtagtggtgttaatgaagat
gatatttcagaaccagaatctgtatcagaagtagattctcctgtcaagaaatccaaaaag
tcagaggcaccctctaagaagagaaagaaaccagaaaagaacacaaaaccatggcgaccg
agtaaaggagggaacgctgattctgacgaagatccagcaaaagaagcagtttctcctccc
acgaatttgtcttctccgtccacgaatttgtcttccccatccacgagccggccgtcctcc
tctactccattagttggtgtaaagacaaaatccaaactggcatcatttgctgccagtgat
caggacatcaaacctgttcgtggaccagagcaagaatcaaactttcctcatctcaagctg
gacttcctacagccagataagattaaggatgcaaagaagcgaaataaggaccatgaagag
tatgatcctaaaactctgtatttgccggattccttcctgagacaacagacaccggccatg
agacagtggtgggaattgaaatccaaacattttgatgctgtactattttttaagatgggc
aaattttacgagttgtttcatatggatgcagctgttggtgtgaatgaactcggattaatt
tacatgaaaggagatcatgcccattcaggcttccctgagatagcatacagtagatatgca
gacgcactgatagcgaaggggtacaaggtggcccggatagaacagacagagaccccagac
atgatgacagagagagtcaaaaacatgggagttcctgcaacaaaatttgacaaagtggta
aagagggagatctgtcgaatcactacccagggaaccaagacgtttaacatgatggacggt
gacattactgaggcctctagtagttatctgctggctctctgtgagaaggacactgggcag
tttggacagagcatctatggagtatgtttcgttgacacaactattggaaaattccagctt
ggacaatttacagatgataggtactgctcgagattaaggacactgattgctcactttaca
cctgtacaggtactaatgccaagagggcgagtatcggagaaaacaacgagcctgattaag
aacaacctgtcctcagttctgaaggagtacttgcgacctgacactgaattctgggacagc
agtaaaactctcaaagtcctcgccgaggaggagtatctgaaagccgaggatgaggcggtg
tggcctgattgtctcaagaagatgatgtctgatggtgacactcttggggtgtgtgctgct
gacgactacactctggctgtgtcctcgctgggggcggtcatctggtaccttcagtactgc
ctgatggatgatgaactcctgtccatgaagaactttgaggaatatattcccgtggactcc
gggaaaatcacatcagaagaaaagtcaactttcaagaaaaatcagcacatggtactagat
ggtctgaccttgagaaacctggatgtggcagacatgtatggagcccaggaagggactttg
ttgtccactctgaatctctgctgcactccgtttggtaaccggttatttaagcaatggttg
tgtgcgcctctgtgtaaccctgcctccattaacgatcgactcaatgctgtggaggatttg
aatgctgttcctgaagttatgtccgaggttacagagatgatccggaaacttccagacctc
gaacgcatcctcagcaaatttcacagccttggatctgcagctcgcagtaaaaagcaccca
gacagtcgggccattttctttgatgaagcaaaatacagtaagaagaaaatagaggatttc
ctctcaacaatagaaggatttaaagtggcccaaaaagtagccaagaaatttcagtctcat
gttgatgacttcacgtcaaaccttctgaagtggactatgacaacggactctgctgacagt
aaaggtttattccctgacttgaaggaggagttacagttctttgataatgctttcgaccat
tcaaaggcgaaaaaagatggagtgattttacctaacaaaggggtgagtcctgaatatgac
tctgctaaggtagacttgaaggcggctgagaggggactggaggaatacttagacaggcag
cgtcagaggctcgggtgtaggacattaacctactggggttcaggaaaaaatcgataccag
atcgaggttccggagagcattctgaaaagggtccctgatgagtacaatctgatgtcttcc
aaaaaaggaaccaagagataccgcaccaaggagatagaagaccagctggtggatctaaca
gaggcagaggagcgtaaagatgctgcccttaaagacaccatgaggagactgttttatagc
tttgatgaaaggtacaaattgtgggatacagccttgcagtgtctatctgtgttagatgtg
ttgatgtccctggccaagtatgttggttctgcagatggggtaacctgtagaccagagatt
ctagaaccaacatctgacaccgagccatttatagagattagagaggccaggcatccctgt
gtcaccaggacgtttggtggaggcgactttattcccaacgacacagtcatcgggatcgct
gatgaactagacacagaggaggaaggagaaaagaacgacaacagtaaaattgtcttggta
acaggtccaaacatgggaggtaaatccactctcatgaggcaggtgggattaatcaccatt
atggctcagatgggctgttacgttcctgctgagaaatgtcgattaactcccatagataga
gtgttcacaaggctcggagctagcgaccgaatcatgtcaggggaaagcacattcttcgtt
gaattgagtgaaacttcagctattttgcagcatgctaccacacattcactagttctaata
gatgaactgggtcgaggaacggctacctacgatggaacagctattgcctgtgcagtggtg
aaggagctctcggagaacatttgttgcaggacgctgttctccacccactatcactccctg
gtggaggaattctctcacgatccaaacatcagactaggccatatgtcctgtatggtggaa
gacgagggtgatcctacagaggagactatcacattcttatacaaatttgcaaaaggagca
tgtccaaaaagttacggcttcaatgttgctcgacttgctgacattcctgatgaggttgta
aaggaggccagggaaaaagcaaaagaatttgaaatggctgtagaacgaaagaaattgttc
aggtcattgttcaaagatgattccattgagaatatcaagaggatacaacagcttctcccg
ggggtactatag
DBGET
integrated database retrieval system
