Ostrea edulis (European flat oyster): 125646293
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Entry
125646293 CDS
T09123
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04140
Autophagy - animal
oed04142
Lysosome biogenesis
oed04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
125646293
04140 Autophagy - animal
125646293
04148 Efferocytosis
125646293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125646293
Membrane trafficking [BR:
oed04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125646293
Hops complex
125646293
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
VPS18_solenoid_2nd
Clathrin
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR3_1st
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_EML_2
zf-C3HC4_2
zf-RING_2
WDR55
VPS18_solenoid_1st
TPR_GEMI5
zf-C3H2C3
ASA1
zf-rbx1
Beta-prop_SPT8
Beta-prop_LRRK2
zf-C3HC4
DUF7914
zf-RING-like
TseH
Motif
Other DBs
NCBI-GeneID:
125646293
NCBI-ProteinID:
XP_048728481
LinkDB
All DBs
Position
6:complement(55347199..55386343)
Genome browser
AA seq
920 aa
AA seq
DB search
MAFLQWRRFNFFDKEVLKDIDTDQVYDKLKDVNISACVSGRGQLIVGDHEGYMYLINKQL
SLNMFKAYEIRVSHLYQMKQHNLLVSIGEDEQGINPLIKVWNLDKMEKGGPLCTRISRAI
PNNKATPVTCLVVHENLNWMAVGFENGSVVLFKGDVTRDRHNKSRLLHESPKPVTAIEFK
TQGKNIFLFVVTEASVTSINISGKQDVKNSIEQFGGKLGCVVMSDHSQDNQLVVARPDAV
YFYQTDSRGPCLAFEGEKLRLHWFRNYLIVVGKEDKALPRPVQIGGQTMEMNIVTVYDIQ
NKFIAYSAPFPDVLDVLSEWGSVYILGGDRKIYQLQEKDTQTKLEMLFKKNNYTLAISLA
KSQHYDQEGLIDIFTQYGDHLYSKGDHDGAIDQYIKTIGKLEASYVIRKFLDAQRIHNLT
KYLQALHKQQQATEEHTTLLLNCYTKLKDVNKLDEFIMTKDREVDFDVETAIRVCRQAGY
FEHAIFLAEKHGKHEWYLRIQLEDIKQYQKALEYIGKLEFIEADENVRKYGKVLMAEVPQ
QTTELLKRLCTDYRPTDKPLIDQTVMDGGIARIERAPAENFIHIFVNNSEKLTEFLEHMI
KVQPNSPSLLYNTLLELYLHDIVHEKDSTRKTERVRKTDELLKNPDARYDLDQAMVLCQM
NDFKAGILYLYEKAHLYQQILRYHMEHDDFVHVIETCKKFGQQDSNLWVQALSYFARKED
NCKPQLMEVLSQIDKKNLLPPLLVIQTLAHNSTATLSVVKDYIIRRLQMENDQIAEDERL
IKQYREDTDKKRAQIEELKTTAKVFQASKCNICNHPLELPSVHFLCEPHSYHQHCFESYA
ENDSECPVCAAENRKIMDIIRAQEQSKDLHEQFHNQLQRSQDGFSVVADYFGRGVFNKVT
LITDSPARQPTKTQPTSRFV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggccttcctgcaatggagaagattcaacttttttgacaaggaggttctgaaagacatt
gatacggaccaggtgtatgacaagttaaaggatgttaatatctcggcctgtgtgagtggg
cggggacagctgattgtgggagaccatgagggctatatgtacctaatcaacaaacagctc
agcctgaatatgttcaaggcctatgagatacgagtgtcccacctgtaccaaatgaagcag
cataatcttctggtctccataggggaagatgaacaaggcattaacccactgattaaagtc
tggaatctggataagatggaaaaagggggaccactgtgtacgagaataagcagggctata
cctaacaataaggccacacctgtcacttgtttagttgtgcatgaaaatttgaattggatg
gctgtcgggtttgagaatggaagtgttgttctgtttaaaggagatgtcacgagagacaga
cacaacaagtccagactcctccatgagagtcctaaaccagtgacagccatcgagtttaag
acccaggggaagaatattttcctgtttgtggtaacagaagccagtgttacatctatcaat
atctcaggcaagcaggatgtcaagaactcaatagagcagtttggtggaaagctgggatgt
gtcgtgatgagtgaccacagtcaggacaatcagctggtagtagccaggccggacgctgtg
tatttctaccagacggacagcaggggaccgtgtctggcctttgaaggggagaaattaaga
ctgcactggtttagaaactatctgattgtggttgggaaggaagacaaagctctacccaga
cctgttcagataggtggccagacaatggagatgaacattgtgacagtgtatgacatacag
aacaaattcatcgcatactccgcccccttccctgatgtcctcgacgtcctgtcagagtgg
ggcagtgtgtacattctaggaggggatagaaagatataccagctgcaggagaaagatact
cagaccaaattagaaatgttgttcaagaaaaataactacacacttgccatcagtcttgcc
aagagccagcactatgaccaggagggcttgatagacatttttacgcaatatggggatcac
ttgtacagtaagggggatcatgatggcgccatagaccagtatataaagacgataggcaag
ctagaggcatcctacgttatacgcaagtttttagatgcccagagaatccacaatttgacg
aaatacttacaagctctgcacaaacagcagcaggctacagaggaacataccacactcctc
ctgaactgttacaccaagcttaaagacgtcaacaagctggatgagttcatcatgacgaag
gatagagaggtagactttgatgtggagacagccattcgagtgtgtcgacaggcaggatac
tttgagcatgctatcttcttggcagagaagcatggtaaacacgagtggtatctgagaatc
cagctggaggacatcaaacagtatcaaaaggctctggaatacataggcaaactggaattc
attgaagcagatgaaaatgtaaggaagtatggaaaagtgttgatggcagaagttccccag
caaacgacggaactgttgaagagactgtgcacggactacagaccaactgacaagccactt
attgaccaaactgtcatggatggtggcatagcgagaatagagagggcacctgctgagaat
tttatccacatttttgttaacaactcggagaaattaacagagtttctggaacacatgatt
aaggttcaacccaactctccaagtctgctgtacaacacactgctagagttgtatctacat
gatattgtgcacgaaaaagatagcacgagaaagacggagcgagtgaggaagacggatgag
cttctgaagaatccagatgcaagatatgaccttgaccaggccatggttctgtgtcagatg
aatgacttcaaggccggcattctgtacctgtatgaaaaagctcacctttaccaacagatc
ttgaggtatcacatggaacatgatgacttcgtacatgttatagagacctgtaaaaagttt
ggacagcaggactccaatctctgggtacaagctttatcatacttcgccaggaaagaagac
aattgtaagccacagctaatggaggtgttgtcccaaattgacaagaagaatcttctgccc
ccattactagtgatacagacgctggcccataattccaccgccacattgtccgttgtcaag
gactacataattcgaagacttcagatggaaaatgatcaaattgcagaagatgagaggttg
ataaagcagtacagggaagatactgataaaaagcgggcacagattgaggagctgaaaaca
acagccaaagtgtttcaggcctcaaaatgtaacatctgtaaccatcctctggagctccca
tctgttcacttcctgtgtgaaccgcattcctatcatcaacactgttttgagagttatgca
gaaaacgactcggagtgtcctgtctgtgctgcagaaaataggaaaatcatggacattata
agggcacaggaacaaagcaaagatcttcacgagcaattccacaatcagttacaaagatct
caagatggcttttctgttgttgctgattactttggaagaggagtattcaataaggtcacc
ctcatcacagactcgccagcgaggcagcccaccaagacccaacccaccagtagattcgtg
taa
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