Ostrea edulis (European flat oyster): 125647241
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Entry
125647241 CDS
T09123
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125647241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oed03032
]
125647241
03400 DNA repair and recombination proteins [BR:
oed03400
]
125647241
DNA replication proteins [BR:
oed03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125647241
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125647241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
TopBP1_BRCT0
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
DERM
Motif
Other DBs
NCBI-GeneID:
125647241
NCBI-ProteinID:
XP_055995905
LinkDB
All DBs
Position
6:complement(52397904..52434737)
Genome browser
AA seq
1641 aa
AA seq
DB search
MGEDEFRVRCIISDEEDGQEKASETMKQAHKSLIEEGFSVCWIRDSDCLKIDRKEKNCVY
LYDPFGGKSFNHIKNLGCRIFGPLCILSSLEYKLDIPKRNVPVYNLAMKDVVICCTNLVK
QRRNEIHDKVEAMGGTVSRDLTNNVTHLIAGEVGSKKYQVAATTGKHIYLPCWVDRVWEA
SQSRHIHGSSSQFLEYSCPIFKGLVITVSGLDSEERNQVKKAVEAEGGKYTGEMKVNECT
HLIINKPKGAKYEFAKKWKIHIVKSDWLYDSIEKGYCLEERQFSLTDDMDDKSEVKTSTP
EKENGCRVDRNSTLADISCISNVSMIQRTHLNETSSTTQNRKSTDEFETTLESIDLSKSS
SDLFLDGCKIYLSGFRGVALEKLRKVINAGGATRLNTLSENVTHVIVGERIEKDLEMLRR
ATYRPHVLTPVWMAECFRQGFTVSEDPYRLSEFPTMDPQSPQGKRKLSEVKNKEPQEERP
VEKPGAPDGDDDEFSDIMSQYLLQADQGPAPSGERTVIDTAAVPTEKGATQEPQATPEEE
EGPIFNKKVFMFFGFEEEHEGELIDYIVEKGGTVSKATSRVIPDYGVVPINGFPVDRTVQ
EIVTNAWVQICLEQDRLLDVSSNVLFSPMDIKMDAAPLTGCVLSVSGFAGTERDCLMHIA
ELLGAECQEYFVRKASKDLKASTHLVVKEAEGSKYQAAKKWNIPAISRRWIFKCAKSGKR
EAENNFLIENELTDSQNLTTSVQIPIITNAQIKQSDSSQINQSSHKNQKVDCEKVESPEE
MECDKWTGAPDDKGHLLLNSSDKPDNNDKEMKKEEENSKGGGSKEKPETWESGMETNQDD
LLMLGMDTGENSRQGSLRGGERKESPEKTDIPESQKENMAGVKTPNLTNQRVKELKTDER
EINPRNTSRRESLNESTGSLDLEKSFHPRFDFSDVLKNLETPEGQKGKQRKVGRRKSSLP
FDELFEEAIHAAAKFTTEYKTMATADEVDGVCDRANDNLVRPLKGVIIYVSKKLSGQQAE
LNDLVAELGGDYKWQYDTSCTHFIFQGKTNDTTKEFRIAREQKKIIVSPLWLRLCKEQNV
RVDESLFPHSYNPNMTLSVVRKATPGRSSPVKSIATRSTPQRGTRRSTRASSSKQSEGIE
TDDLPKPTSPTSLPTVTDSKLNKRSGATTPEPSDKQQRMSPDSEAIGAGTDAVTEEPIEM
AGTLDYREELAKQLKEDMAVTKIKKTQGRRKSRKFNCSGQMNMSGDGSSNDSGAQSRSGS
RAGRWSMTDDQKDAQKSEAPAKESSLPESSQTVHVMWDDPTGRLEQEKLAHKLQRACSPT
QDVHNVQEMMDAQFSDVEEEHPVPQLPENEPDRRLSSPPAPPVAFHRQSEPSVPSPQPVT
IVHDVKEDRKSAPPIFILSGMSQEERDDYGVLVENLGGRMLDGQNFDPSCTHLVIGVPAR
NEKFLACVASGKWVLHKSYFEACRQEGKFVQEDFYEWGGEGTASLLEKMNPAVRKLCEAA
HSWRLKINSASQSCVGAFSDWKVLLCTDRKKEDNFRRLLEAGGATVNNVKPPFSKSVSAS
HAFMELNKVEMSEDDIGLLVKLGVICVKPDFIAAHLTNNPAPNPDDYCPSEVKTLLQSKQ
CARRTKTLPGSCFLYVTRCMH
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagacgaattccgggttcgctgtattatctcagatgaggaagatggacaagag
aaggcatctgagaccatgaaacaagctcacaagagcctgatcgaggaaggattcagtgtc
tgttggatcagggactccgactgcttaaagattgaccgaaaagagaaaaattgtgtttat
ctctacgatccatttggcggcaaatctttcaaccacatcaaaaatttggggtgcagaata
tttggaccactctgcattttgtcttcacttgagtacaaacttgatattcccaagaggaac
gttcctgtctacaacctggccatgaaggatgttgttatttgctgcaccaatctcgttaaa
cagagaaggaacgaaatacatgacaaggtagaggccatgggaggcactgttagccgggat
ctaacgaataacgtcacacacctcattgcgggggaggtcggcagcaaaaaataccaggtg
gcagctaccactggcaaacatatttacctcccttgttgggtggacagagtatgggaagcc
tctcagagcaggcacatccacggcagtagtagtcagtttctggagtactcctgtccaatt
tttaagggactggtcatcacagtgtctggtctggactcggaggaaaggaatcaggtcaaa
aaagccgtggaagctgaaggaggtaaatatacaggagaaatgaaggtcaacgagtgcacg
catctgatcatcaacaagcccaaaggcgctaaatacgagtttgcgaagaaatggaagatt
cacatagtgaaatctgattggttgtatgactccatcgagaaggggtactgcttagaagag
cgacagtttagtttgactgatgatatggatgataaatccgaggtcaaaacatcgacccca
gagaaggaaaatggatgtagagttgatcgaaattccacattggctgacatcagctgtata
tcaaacgtatcaatgatccagaggacacatctaaatgaaacatcgagcaccactcagaac
aggaagtcaacagatgagtttgagacgaccttggaatccattgatctctccaaatcttca
tcagatctcttcctagatggctgtaagatatatttgagtggtttcagaggagttgctttg
gagaaattgagaaaagtcataaatgcggggggagccacaaggttgaacaccctcagtgag
aatgtcactcacgtgatagtaggcgagaggattgagaaagatctcgagatgctgagaaga
gccacttacaggccgcatgttttgaccccggtctggatggctgagtgtttcagacaaggc
tttacggtcagcgaggacccctacagactttctgaattcccgaccatggatccacagtct
ccccaggggaagagaaaactgtcggaggtgaagaataaggagcctcaggaagagaggccg
gttgaaaagccaggggcaccggacggagatgatgatgaattctctgacattatgagccaa
tatcttcttcaagctgatcagggtcccgctccatcaggggagagaactgtgatagacacg
gcagcagtccctacagagaagggcgcgacacaggaacctcaagcaactcctgaagaagag
gagggtcctatatttaacaaaaaggttttcatgttctttgggtttgaagaggaacatgag
ggagagcttatagactacattgtggaaaagggagggacagtatccaaggcaaccagccgt
gtgatacctgactacggggtggtgcccatcaatggatttcctgtagaccgaacagttcaa
gagattgtcaccaatgcctgggtgcaaatatgtttggagcaggacagactattagatgtg
tccagtaatgtgttattttctcccatggacatcaagatggacgctgcccccctcacaggt
tgcgtgctctctgtcagtggctttgctgggacagagagggattgtctgatgcatatcgct
gagcttctcggtgctgaatgccaagaatattttgtacgcaaggccagtaaggatttgaaa
gccagtactcacctggttgtcaaggaagcagaaggttctaaataccaggcagccaaaaaa
tggaacattccagccatctctaggaggtggatatttaaatgtgccaaatctggaaaaaga
gaagcagagaacaatttcttgatagaaaatgaacttacagattctcagaatctcaccaca
agtgttcaaatacccatcattacaaacgctcaaatcaaacaatctgacagcagccagata
aaccaatctagccacaaaaaccaaaaggtagactgtgaaaaagtagagagtccagaggag
atggagtgtgacaaatggacaggtgcccctgatgacaaggggcacctgctgttaaattca
agtgataaacctgacaataatgacaaagaaatgaagaaagaggaggaaaattcaaaaggt
ggtggatctaaggaaaaaccagaaacgtgggagtctggcatggagacaaatcaggatgat
ctgttaatgttagggatggatacaggtgaaaacagcaggcagggatcactgaggggtgga
gaaagaaaagaatctccagaaaaaacagatataccagagagtcagaaagagaacatggct
ggggtgaagacccccaatttgactaatcagagagtcaaggagttgaagacagatgaaagg
gagataaatccacgaaacacgtcacgacgagaaagcttgaatgagtctactgggtcgtta
gatctggaaaagtccttccacccccgatttgatttttccgatgtactgaagaacctggaa
acgcccgagggtcagaaaggaaaacaaagaaaagttggccgcaggaagtccagtctgcca
tttgatgaattgtttgaggaggccattcatgcagctgccaaattcaccacagagtacaaa
accatggcgaccgcggacgaagtggacggggtctgtgacagggctaatgacaatttggtg
cgcccattgaaaggagtgataatctatgtgagtaagaaattaagtgggcagcaggcagag
ctgaatgacctagtggcagaactgggaggggattataaatggcagtatgacacatcctgc
acacacttcatattccaggggaaaacgaatgacacgaccaaagaattccgaatagctaga
gaacagaagaagatcatcgtgtccccgctctggcttcgcttgtgtaaagaacaaaatgtg
agagtagacgaatctctgtttccacatagctacaatcccaatatgacgctgtcggtggta
aggaaagcaactccaggtcggagttctccagtgaaatcaatagccactcgaagcacgccc
cagagagggacaagaaggtcaacccgggccagctccagtaaacagtcggagggtatcgag
actgacgacctgccgaaaccgaccagtccaacatcattacccactgtcacagactccaaa
ctgaacaaaaggagcggggccacaacgccagaacccagtgataaacaacaacgaatgtca
cccgacagtgaagctattggtgcaggcacagatgctgtcacagaggagccaatagagatg
gcaggtacccttgactacagagaagaactggccaaacaattaaaagaggacatggcagta
acaaaaataaagaaaacacagggaagaagaaaaagtaggaaatttaactgtagtggtcag
atgaacatgtctggggatgggtctagtaatgatagtggggcacagagtcgctcagggtca
agggcaggtcgctggagtatgactgatgaccaaaaagacgcccagaagtcagaggcccca
gcaaaggagagctcccttccggagtcttctcagacagtccatgtgatgtgggatgacccg
accgggcgactggagcaggagaaactcgcccacaaactgcagcgggcatgtagccccacc
caggacgtccacaacgtacaggagatgatggatgctcagttctctgatgttgaggaggag
caccctgtgccacaactgccagagaatgaaccagacagaaggttgtcttcacccccagca
cctcctgttgctttccacagacagtctgagccatctgttccttctccccagccggttact
atagtacacgatgtgaaggaggaccgtaaatcagccccgcccatcttcatactgtcaggg
atgtcacaggaggaaagagatgattatggagttttggtagagaatctcgggggcaggatg
ttggacggtcagaactttgacccctcctgtactcatttggttattggtgtcccagctcga
aatgaaaagttcctggcctgtgtagcttctgggaaatgggtcttgcacaagtcttatttc
gaggcttgtcgacaagagggcaagtttgtacaggaagatttctacgagtggggtggggag
ggaacagctagtctgctggagaagatgaaccccgccgtcaggaaactgtgtgaggccgct
cacagttggaggctaaaaatcaactctgcttcacagtcctgtgtgggagcattcagcgac
tggaaagttttgctgtgtacggatcggaagaaagaagacaacttccgcagacttctagag
gcagggggagccactgttaacaacgtcaaacctccgttttctaaatcggtgtctgctagc
cacgcgtttatggaactgaacaaggtcgagatgtcagaggatgacattgggctcctggta
aagttgggggtcatttgtgttaaaccagacttcattgcggcccacctgaccaacaatccg
gcccccaatcccgatgattactgcccttcagaggtcaagacactgttacaaagcaagcaa
tgcgcacgcaggaccaagacattgcccggaagttgctttctttacgtcacgagatgcatg
cactga
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integrated database retrieval system
