Ostrea edulis (European flat oyster): 125648416
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Entry
125648416 CDS
T09123
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-like
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oed03016
]
125648416
Enzymes [BR:
oed01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
125648416
Transfer RNA biogenesis [BR:
oed03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
125648416
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Nup49_C
Motif
Other DBs
NCBI-GeneID:
125648416
NCBI-ProteinID:
XP_048731478
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Position
6:complement(43479573..43510595)
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AA seq
570 aa
AA seq
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MSYSKLMNPKKKRRVFATKESPFPVPIASITGEQSSRKQWMYFTGNLFGNQVIIHHSGDM
NFMYKMGFFGKGSLSRSKPEFNQRCKVVALPVSRAETNQCRIITRRSYIRRLNWQNSESG
DVECDEYDSSQEMEFLDNETNHVEEKPDNVVQSELPSNIEGKDEGETDTKETNRSAAGDD
WSAVIESWDNAEADEDFWGMGPSEKTDKGPSSTTIGTMLVKRQKINEWECSGADVNFICN
ETSFTDSSPSKNLDSFSDLQSKNISSKELNQNSDNVEQIMGEYSKSVPNVENHKDEIDNE
KSKQTNFLNETKSETTETQQNDIMRTRTDVVSTTPHEKEKMQLHVTDPLCISEEEHGNLF
VMEDSDHQSENRKRKWEEPTWRPVVKEDPYFVKEFLYLTLEESFFLAYGLGCLRVYEKGQ
LLNLTEMWRTFCQRQDRFISLYAVYHYFRSKGWVPKSGLKFGTDFIIYKEGPPFYHGSYS
VLVKMVKEDCLTEEESSRSLTWTQLAGLNRLTEHVAKELMICYVVKPKSISQSDMMASPR
IINQFKIREMVVTRWISSQERESKSSEEIP
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactccaaattgatgaatccaaaaaagaagaggcgggtgtttgccactaaagaa
tcgccattccctgtgcctatagcaagtattacgggggaacaatcttcaaggaaacaatgg
atgtacttcacagggaatctgttcggcaaccaggttatcatccatcactctggagatatg
aacttcatgtacaaaatgggattctttgggaagggatctctatcaagaagtaagccagag
tttaaccaaagatgcaaagtggtggcacttccggtgtctcgagcagaaaccaaccaatgt
agaataatcaccaggagaagctacataaggaggttgaattggcagaattctgagtcaggt
gatgttgagtgtgatgaatatgatagttcacaggaaatggagttcttggataatgagaca
aatcatgtggaggaaaaaccagacaatgttgtccaatcagaattaccttcaaatattgag
ggaaaagatgaaggtgaaactgacacaaaagagaccaaccggtcggctgcaggggatgat
tggtcagcagttatagagtcatgggataatgctgaggcagatgaagatttctgggggatg
ggtccatctgaaaaaacagacaaaggcccttcttcaacaactataggaacaatgttagtt
aaaagacaaaagataaatgaatgggaatgctctggggctgatgtcaacttcatttgtaat
gaaacttcatttacagactctagcccaagtaaaaatttagattcattttcagatttacaa
agtaaaaatatctcatcaaaggaactaaatcagaattctgataatgtagaacaaatcatg
ggagaatattccaaatctgtgccaaatgttgaaaaccataaagatgaaattgataatgaa
aagagcaaacaaactaatttccttaatgagactaaatctgaaacaacagaaacacaacag
aacgatataatgcgtactcgtactgatgtagtgagcacaactccacatgaaaaggaaaaa
atgcagctgcatgtaacagatccattgtgcatatctgaggaggagcatggaaacttgttt
gtgatggaggattctgatcatcaaagtgaaaatagaaagaggaagtgggaagaaccaaca
tggaggccagtagtaaaagaagatccttactttgtcaaagaatttctatatcttaccctt
gaagagagtttctttctggcttatggtcttgggtgcctacgagtgtatgaaaaaggacag
cttttaaatctaacagaaatgtggagaacattttgtcaacgacaagacagatttatctct
ctttatgcagtgtaccattacttcagaagtaaaggatgggtacctaaatctggactcaaa
tttggaacagacttcattatctacaaggaagggccacctttttatcatggaagttactca
gttttggtgaaaatggtgaaagaagactgtttaacagaagaggaaagttcgcgatcttta
acctggactcagttggctggactgaatcgcttaactgaacatgtagccaaggaactgatg
atctgctatgtagttaaacctaaaagcattagtcaatctgatatgatggcatctccaagg
atcatcaaccaattcaagatcagggagatggttgttacacgctggatttcatcacaagaa
agagaatccaaatcttctgaagaaataccatga
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