Ostrea edulis (European flat oyster): 125649131
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Entry
125649131 CDS
T09123
Name
(RefSeq) WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125649131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oed03009
]
125649131
Ribosome biogenesis [BR:
oed03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125649131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_ACSF4
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_like
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_1st
WD40_2
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_IFT122_1st
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
125649131
NCBI-ProteinID:
XP_056022071
LinkDB
All DBs
Position
5:49730109..49740584
Genome browser
AA seq
618 aa
AA seq
DB search
MRRMKHVLKMAAVIPFAISDNSQYSIYSSPDGVLKLWEADNGVLKQEYTPSAHLSATCTC
LSWGPKRNLDVPGRKKRRKSGGSAITEQYDLIAVGTTAGSILIYSIVKGDVKTIMEEGHA
DTVSDVCWHPENNTLFSCSCDRHIIHWDVISGKVKHKWKGDSGSIHSICLCAQNHLLSSG
RSIKLWDLETYSVLKKFTGHATEVFRLLPILSSPTELPETPEGAYFLSAALNDRLVNVWH
INTSVKDKSSIASFSLPEEPVMLDLRKEQEEVILAAVTKSGQVNVFVHTMNGKVKKPLKP
KVTIQIASSGGNDSIPKPIQILASQLCEDQRLLLVYGNYLKPVFEKLVLDMSSSDVCLIR
EEPVLSSVKHQAEVSKLKMPGVSNDVTILAPENTVASGPSLKEKRKRKPSVSDMNMEERL
NAISINKPETSKEPPKADTLVRLLTQGLQSEDKNILKVCILSVYLSCEYIYIINRIFLYA
PTNFSARHNTFILTLNGTFWCMFQFPDMVDNLSVLYQSMDSRTKLVDRLSKLKGKLELML
SQIANQAQQGEEDVVPDQRPLLMYQEESSDDDIAVDNLMPDRSDTEDFDDLFLSDTEAAT
DQAQVNGTEEDEEDMESD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaatgaaacacgtgttgaaaatggctgccgtcataccgtttgcgatatcggac
aacagtcaatatagcatctattcgagtcccgatggagtattgaaactttgggaagcagac
aatggtgttctcaagcaggaatatacacccagtgcacatctgtcagcgacatgcacgtgc
ctttcatggggaccgaaaagaaacctggatgtaccaggacgaaagaaaagaagaaaatca
gggggttcagcaattacagagcagtatgatttgattgctgtgggaaccactgcaggaagc
attcttatttatagcattgtcaaaggagatgtcaaaacaattatggaagaaggtcatgca
gacactgtaagtgatgtttgttggcacccagaaaacaacactttattcagctgttcttgt
gacagacacattatccactgggatgttatatctggaaaagtcaaacacaaatggaaaggg
gacagtggaagcatacattctatctgtctctgtgcacagaatcaccttttgtcttcagga
agatcaatcaaactctgggatttagagacatatagtgtattaaagaagtttactggtcat
gctacggaggtattcagattgcttcccatactctccagtccgacagagctgccagagact
ccagaaggagcctatttcttatcagcagctctgaacgacagacttgtgaatgtttggcat
attaacacctcggtgaaagataaaagctccatagcatcattttcacttccagaagaaccg
gttatgttagatttaaggaaagaacaggaagaggttatactagctgcagtgacaaagagt
ggacaagtgaatgtatttgtccatacgatgaatggaaaagtgaagaaacctctaaagcca
aaagtgaccatccagatagcatcatcaggaggtaacgactccattcccaaaccaattcag
atcctggcttctcagctgtgtgaggatcagcgcctgctgttggtgtatggaaattatttg
aaacctgtgtttgagaaattggtgttggatatgtctagttcagatgtgtgtttgatacga
gaagaaccagtattgtcatctgtaaaacaccaggcagaggtgtccaagttgaagatgcca
ggggtctccaatgatgtgacaattcttgctcctgaaaacactgtagcaagtggaccttca
ctgaaagaaaagaggaaaaggaaaccatctgtatcagatatgaacatggaagagaggtta
aatgccatcagtataaataaaccagagacttccaaagaaccacccaaagcagacacacta
gtgaggctgctgacccagggtctgcagagtgaagataaaaacattctcaaagtgtgtatt
ctttctgtttatctgtcatgtgaatatatttatattataaatcgcattttcctctatgca
ccaaccaatttcagtgcacgacacaatacgttcatattgactttgaatggaactttttgg
tgcatgtttcagtttcctgacatggtggataatttgagtgtattgtatcagtccatggat
tcacggacaaaattagtggaccgtctgtcaaaactcaaaggaaaactggagcttatgtta
tcgcagattgcaaaccaagcacaacaaggggaggaagatgttgttccagatcaaagacca
cttctaatgtatcaagaagagtcatcagatgatgatattgctgttgacaatttgatgcca
gataggtctgatactgaggattttgatgatttgtttttatcggatacggaggcggcgaca
gaccaggcccaagtgaatggtaccgaggaggatgaagaagacatggagtcggattga
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