KEGG   Ostrea edulis (European flat oyster): 125650228
Entry
125650228         CDS       T09123                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03010  Ribosome
oed04120  Ubiquitin mediated proteolysis
oed04137  Mitophagy - animal
oed04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    125650228
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125650228
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    125650228
   04137 Mitophagy - animal
    125650228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:oed03011]
    125650228
   04121 Ubiquitin system [BR:oed04121]
    125650228
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oed04147]
    125650228
Ribosome [BR:oed03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    125650228
  Archaea
    125650228
Ubiquitin system [BR:oed04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   125650228
Exosome [BR:oed04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   125650228
  Exosomal proteins of colorectal cancer cells
   125650228
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Dsc3_N TBK1_ULD Ubiquitin_5 OTU1_UBXL
Other DBs
NCBI-GeneID: 125650228
NCBI-ProteinID: XP_048734299
LinkDB
Position
5:complement(77329706..77343471)
AA seq 156 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKNYTTPKKNKHKKKKVKLAVLKYYKVDENGKITRLRRE
CPNEECGAGVFMASHFDRQYCGKCCLTYVFNKPEEK
NT seq 471 nt   +upstreamnt  +downstreamnt
atgcagatctttgttaagaccctcacgggtaaaactattaccctagaggttgagcccagt
gatactatagaaaatgttaaagccaagattcaggataaggaaggtattccccctgaccag
caaaggttgatctttgccggaaaacagctggaagatggaaggactctgtctgactacaac
atccagaaggagtccaccctccacctggttctccgtctgcgtggtggtgccaagaaaagg
aagaagaagaactacaccacccccaaaaagaacaaacacaagaagaagaaggtcaagtta
gcagttctcaaatactacaaggtggatgagaatggcaagattacccgtctgaggagggaa
tgtcctaatgaggagtgtggggccggtgtcttcatggcctcccattttgacagacagtac
tgcgggaaatgctgcctgacttatgtattcaataaaccagaagagaaataa

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