Ostrea edulis (European flat oyster): 125650320
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Entry
125650320 CDS
T09123
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03008
Ribosome biogenesis in eukaryotes
oed03013
Nucleocytoplasmic transport
oed03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125650320
03015 mRNA surveillance pathway
125650320
03008 Ribosome biogenesis in eukaryotes
125650320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125650320
03009 Ribosome biogenesis [BR:
oed03009
]
125650320
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125650320
mRNA cycle factors
Stress granule specific factors
125650320
Ribosome biogenesis [BR:
oed03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
125650320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
LRR_8
NTF2
LRR_4
UBA_8
TpcC
Motif
Other DBs
NCBI-GeneID:
125650320
NCBI-ProteinID:
XP_048734460
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All DBs
Position
5:40247823..40278378
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AA seq
659 aa
AA seq
DB search
MSNFSVTTGRDGSRSFGEHDDRWSDSHGGGKQRNRGRGGRPYGGYRGNRGGNYSRGGYQR
RGSGRGGYSRGRGRGRGGPNPRSRLDEDGDFSMDDDGTSSSRERFSPYGVPRRSAGRGKN
RNGDNYAVMQRLGIPVTDSDSPQWHKVVIPFGRKGGKDFILKSLRDRLNTPFNPVNFHFE
QEKAIFFVQEKQEAMAIRSQDKKIQLPNGFKMILIVKPCSPPVTEINSEALEKLKVCMSS
RYDPSTKSLNLSCLAKDQALMAENLFMALSRRSVMTSVIKIIDENIPELEELDVSDNRLI
SLETMRELPTKALNVKKLNLGKNKLSHIDELRKLQDWKLEHLILEGNDLCDKFKDQTSYV
SAVRKKFPKVLILDGHTLPPPIVFDLETSSELPAVKGSFFINDEIQSSIVHFLKAYFTLY
DSDNRQQLIDAYSDEALFSLSAARNPNIEYSQPNINNYLQESRNFVKMSKDSQGTVRKNK
LLKKGRINVVAQLCELPSTTHDYNSFIVDVDHSSGVLRSFVVEGVFKETEGKSDRPPTRA
FSRKFVTVPHGSGMNIINDMLTITNASREQIQNAFKHPAPTPSSSPVPDASPAAPFSPAP
STYTAEQQQMIQQFSAQSGMNHAWSLKCLEQHAWNYEKSGEVFLELQKQNKIPPEAFAK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacttttctgtaaccacagggagagatggaagtcgttcctttggtgaacatgat
gataggtggtcagatagtcatggtggtggaaaacaaagaaaccgtgggcgcggcggtaga
ccatatggtgggtacagaggaaacaggggagggaactacagccgcggagggtaccagagg
aggggtagtggacggggtggatacagcagaggacgagggagaggaaggggcggacctaac
cccaggagtcggttagatgaggatggagacttcagcatggatgacgatggcacctcctct
tccagggaaagattttctccgtatggtgtaccaagaagatctgctggaagaggaaaaaat
agaaatggggataactatgcagtgatgcagagattgggtatccctgttacagattctgac
agtccgcagtggcataaagtggttataccgtttggcagaaaaggtggaaaagattttata
cttaagtcactgagagatagactaaacacaccgttcaatcctgtcaattttcactttgaa
caagaaaaagccatattttttgtgcaagagaaacaggaggccatggcaataagaagtcag
gataagaaaattcaattaccgaacggattcaagatgattttgattgtgaaaccctgctct
ccaccagtaacagagatcaacagtgaagcactagagaaactgaaagtttgtatgagttca
agatacgacccatcaacaaaatcgctcaacctcagttgtttggccaaggaccaggcattg
atggcagagaatttgtttatggcactgagccgaagaagtgtaatgaccagtgtcatcaaa
atcatagacgaaaacattcctgagctagaagaactagatgtcagtgacaacaggctgata
tcactggagacaatgagggagttacccacaaaggctctcaatgttaaaaaattaaacttg
gggaagaacaagttgtctcatattgatgaactgcgaaagctacaagattggaagcttgaa
catctgatactagaaggaaacgacctttgtgataagttcaaagatcaaacatcctacgtt
agcgctgtaaggaagaagtttccaaaagttctgatattggatggacatactctgccccca
cccattgtctttgatctggaaaccagttccgagctgccggctgtgaaggggagtttcttc
atcaacgacgagatacagagctccattgtgcattttctgaaggcgtattttacactttat
gattcagacaacaggcagcaattaatcgatgcatatagtgatgaggcattgttttcattg
tcggctgcaaggaatccaaacatagaatattcgcaaccaaatataaacaattacctccaa
gaaagcagaaacttcgttaaaatgagcaaagacagtcaaggaacagtgaggaaaaataag
ttgctaaaaaaagggagaataaacgtagtagctcaactgtgtgagctgccctccactaca
catgactacaactccttcattgtggatgttgatcattcctcgggggtccttagaagtttt
gtggtagaaggagtttttaaagagactgaaggcaagtccgacaggcctccaaccagagcc
tttagtcgcaaatttgttacagttccacacgggtctggaatgaacatcatcaatgacatg
ctgactatcaccaatgcctccagagaacaaatacagaatgccttcaaacaccctgccccc
accccctcttctagccctgttcctgatgcctctcctgcagcaccgttttctccggccccc
tctacatacacagcagaacaacagcagatgattcagcagttttctgcccagtcaggcatg
aaccatgcatggtctcttaaatgcctggaacaacatgcatggaattatgagaaatctgga
gaggtgttcttggagttacagaaacagaataagattccccctgaagcatttgcaaaatga
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