Ostrea edulis (European flat oyster): 125651468
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Entry
125651468 CDS
T09123
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125651468
03016 Transfer RNA biogenesis [BR:
oed03016
]
125651468
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125651468
Spliceosome [BR:
oed03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125651468
Transfer RNA biogenesis [BR:
oed03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125651468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125651468
NCBI-ProteinID:
XP_048736050
LinkDB
All DBs
Position
1:complement(49574226..49785943)
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AA seq
732 aa
AA seq
DB search
MTAFEEMGVMPEIGQAVEEMDWSLPTDVQSEAIPMILGGGDVLMAAETGSGKTGAFCLPI
LQIVYETLKDQQEGKGSKLSTHQSGHTSSAHWKMNPYDRGDAMAIDTEGLLCQARDAQGW
HGTRSNKAVVGGGKYYYEAVVTDEGLCRVGWSTDKATLELGIDKFGFGFGGTGKKSWGKQ
FDSYGEAYGMNDTIGCYLDLDRMEIKWSKNGVDLGKAYDIQPHLKNEKFFAAVTLKNAEM
KFNFGNTPFKFPPKDGYKALCNAPSDNVVQSRIVASGAVNAKPASNAPQAIIIEPSRELA
EQTFNQIQKFKVHLSNPTIRELLIIGGVNVRDQVDVLETGVDIVVGTPGRLEDLISTGKL
ALHQCRFFVLDEADGLLSAGYSDMINRLHQQIPKVTNDGKRLQMVVCSATLHSFDVKKMA
ERLMYFPTWIDLKGQDAVPETVHHVVCNVDPEADTRWKSLKSHIGTDGVHYNDKCSSNNP
SRETLSEAVKILKGEYVIQALDVHKMDKALIFCRTKLDCDNLEKYLQLRGGGKYSCVCLH
GDRKPQERKANLQKFKDNKVRFMICTDVAARGIDISGLPYVINVTLPDEKQNYIHRIGRV
GRAERMGLAISLVAGVKEKVWYHSNCNTRGRGCYNTNLTDQGGCCIWYDEPKLLSDVQEH
LDITIDKVDPSMAVPLNEFDGKVTYGQKRKNTGGAYQGHVASLAPAVKELAELEKRAQTS
FIDLKYKKFAHR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctttgaagaaatgggtgttatgcctgaaattggacaggcggttgaagaaatg
gactggagtttgcccacagatgtgcagtctgaggccattccaatgatactgggaggtgga
gatgttttaatggctgcagaaactggaagtggaaaaacaggggcattctgtttgccaatc
cttcagattgtatatgagacactaaaagatcaacaagagggaaaaggcagcaagctgtct
acccatcagtcaggtcatacaagcagtgcacattggaagatgaatccatatgatagagga
gatgcaatggcgatagacacagagggcctgttatgtcaggcaagagatgcccaaggctgg
cacggtaccaggagtaacaaggcagtggtgggaggaggaaagtactactatgaggctgtt
gtaacagatgagggtttgtgtcgtgtgggctggtccacggataaagccacactagaactg
ggaattgacaagtttggcttcggatttggaggaactggaaagaaatcttggggcaagcag
tttgacagctatggagaggcctatggaatgaatgacaccattggttgttacctggatttg
gacaggatggagataaagtggtccaaaaatggggtggatttgggcaaagcttatgatatc
cagccacatcttaaaaatgagaaatttttcgcagcagtaacactgaaaaatgcagaaatg
aagttcaactttggaaacactccattcaaatttccacccaaggatggatacaaagcattg
tgtaatgcaccttctgataatgttgtccagtccagaattgtagcatccggagccgtgaat
gctaagccagcctcaaatgcgccccaggctatcattattgagccttcaagagaacttgct
gagcagacttttaaccaaatccagaaattcaaggttcacctcagcaatcccacaatcaga
gagttgctgataattggtggtgtgaatgtaagagatcaagtagatgtactggaaactgga
gttgacattgtggtgggcacacctggtcgtctggaggacctgatttctacgggaaaattg
gccctacatcagtgcaggttctttgtccttgatgaggcggatggtctcttgtctgctggt
tatagtgacatgataaatcgacttcaccagcagatccctaaggtcactaatgatggcaaa
cgtttgcagatggtcgtctgctcagctacactgcattcttttgatgtcaagaaaatggct
gagagattaatgtactttccaacctggattgatctgaaaggacaggatgctgtaccagag
actgtccatcatgtggtatgtaatgttgacccagaagcagatacacgatggaaatccctg
aaaagtcatattggaacagatggggtacattacaatgacaaatgctcatcaaataatcca
tcaagagaaaccttgtctgaagctgtgaagattctgaagggagaatatgtcatccaagcc
ctggatgtacacaagatggataaagctctcatcttttgtcgtaccaagctggactgtgat
aatctggaaaagtacctgcagctgagaggaggaggtaaatattcgtgtgtttgtttgcat
ggagacaggaaaccacaggaaaggaaggctaatttacagaagtttaaggacaacaaagtt
cggttcatgatttgtacggatgtagcagccagagggattgacatcagtggtctgccatac
gttattaatgtgacattacctgatgaaaaacagaactacattcaccgtattgggagagtc
ggaagggctgaaagaatgggtctggcaatatcattggttgctggtgtgaaagaaaaggtg
tggtaccactccaactgtaacacgagagggagaggctgctacaacactaacctgacagac
caaggaggatgttgtatttggtatgatgaaccaaagttactgtcagatgtacaggaacat
ttagatattacaattgacaaggtggatcccagcatggctgtccctcttaatgagtttgat
ggcaaagtgacgtatggacagaaacgcaaaaatacaggtggagcttatcaaggacatgtg
gcctctctggctccagctgtgaaagaattggcggaattagagaagagagctcaaacttca
tttattgatttaaagtacaaaaaatttgcccaccgttag
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