Ostrea edulis (European flat oyster): 125652036
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Entry
125652036 CDS
T09123
Name
(RefSeq) CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125652036
09124 Replication and repair
03420 Nucleotide excision repair
125652036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125652036
03400 DNA repair and recombination proteins [BR:
oed03400
]
125652036
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125652036
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125652036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-UDP
TRAF3_RING
zf-RING_2
zf-RING_4
zf-C3HC4_2
HMBD
Zn_ribbon_6
LMBR1
DUF7129
DZR_2
DUF604
DNA_ligase_ZBD
Motif
Other DBs
NCBI-GeneID:
125652036
NCBI-ProteinID:
XP_048736884
LinkDB
All DBs
Position
5:complement(45377724..45390293)
Genome browser
AA seq
310 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLLVNVCGHSLCETCVEALFVKGSGSCPECGTALRKINFRV
QLFEDPSTEKEIEIRKKILKDYNKKEEDFDTLEEYNDYIERIETIIYNIVNNIDVDDTKQ
MIEKYKRDNKDQISKARNKKSKDEEYLENLIEQEKEENVRKRKLIVEEEQWEKDSKKRHR
EALLDELMFSDRSAKDILTEHKTDIDKENEIHASVIAKTEFSTGIKLGSQGPFMSVPLET
AELYSYCPIHLDVLGPEPPEEEELDTKGYLNNVRNASEQEKAGGFDSKLSCMRALLDAVN
GLFYLPVQVQ
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccagggttgtcctcgttgcaaaacaacgaaatatagaaacccgtccttaaaa
ctccttgtcaacgtttgtggacattccctatgtgaaacttgtgtagaagctttatttgtc
aaaggttcaggatcctgtccagaatgtggaacggccttgaggaaaattaattttagagtt
caattatttgaagatccatctacagaaaaggaaatagagattaggaaaaagattttaaaa
gactataataaaaaagaagaggattttgatactttggaggaatacaatgattatatagaa
aggatagaaacaataatttacaatattgtgaacaatattgatgttgatgacacaaaacag
atgattgaaaagtacaagagggataataaagatcaaatcagtaaagcaaggaataaaaag
agcaaggatgaagaatacttggagaacttaattgaacaagaaaaagaggaaaatgtacgc
aagaggaagctaattgtagaggaagaacaatgggagaaagactccaagaagagacacagg
gaggcactgctggatgaactgatgttttcagacagatctgccaaggatatcctaacagaa
cacaaaacagacatagacaaagagaatgaaatccatgcttctgtgattgccaaaacagag
ttctccactggaatcaaattgggatcccaggggccatttatgtcagtacctctagagact
gctgagttgtacagctactgccctatacatctggatgttctgggaccagagcccccagag
gaagaagaactagacacaaaagggtacctgaacaatgtacggaatgcctcggaacaagag
aaggctggaggttttgattcgaagctgtcatgcatgcgagctctactggatgctgtgaat
ggactgttctatctccctgtccaagtccaatga
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integrated database retrieval system
