Ostrea edulis (European flat oyster): 125652407
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Entry
125652407 CDS
T09123
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03008
Ribosome biogenesis in eukaryotes
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125652407
09123 Folding, sorting and degradation
03018 RNA degradation
125652407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125652407
03019 Messenger RNA biogenesis [BR:
oed03019
]
125652407
03009 Ribosome biogenesis [BR:
oed03009
]
125652407
03016 Transfer RNA biogenesis [BR:
oed03016
]
125652407
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125652407
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125652407
Ribosome biogenesis [BR:
oed03009
]
Eukaryotic type
Pre-60S particles
RNases
125652407
Transfer RNA biogenesis [BR:
oed03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125652407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
125652407
NCBI-ProteinID:
XP_048737554
LinkDB
All DBs
Position
5:complement(58372550..58432427)
Genome browser
AA seq
954 aa
AA seq
DB search
MGVPAFFRWLSRKNPTIIVHCIEEKPKEVDGVKIPVDTSQSNPNDYEFDNLYLDMNGIIH
PCCHPEDKPAPRNEDEMMILIFEYIDRIFSIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKETKEKIEEMARLRDELSSKGYNLPPEKEKGEHFDSNCITPGTPFMFRLADCLRYYIH
ERLNNDPGWQNIKIILSDANVPGEGEHKIMDFIRRQRGQPDHDPNTKHCLCGADADLIML
GLATHEPHFTIIREEFKPNQPRPCDLCGQLGHEMKECLGLPKEMCGENDELPKLMGAEQE
FIFIRLNILREYLERELLMDNLPFKYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVKLYKSCVRRTGGYLTNSGVVNLERVQVVMSDLGQVEDEIFKRRRETELEFRRRDKQ
RKQREKRFADGPRWTPGGQFAPQPLGHSHNSPSPVSNPRHEAARGRVDSMRNTTNKNAAA
ELRAMMTKDDQRGEKRKSGDQSKPDEEEEDAEPADEVRLWEDGWKDRYYSSKFGVDGSDE
EFRHTVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIAQLSNSFEKHTVPF
KPLEQLMGVFPAASKKHLPLTWQRLMCDPESPIIDFYPTDFKIDLNGKKYAWQGVALLPF
VDEKRLLSALEKVYPDLSEEECERNTWGNDRLFVGIRHPSYSFLEGLYEGEKTTEGVQLN
PKNSEGMAGLVWSDKRVTLTGETVESPLKELQPITDNRALSVHYKDPQYDEDHLFEAVVL
EGAVMPDKVLKPEDFNQRNPGRGWRPQVGMSRNSMYRGKDMGAANRMIRHGVGNQYGATI
PPPRNFGQQGGGYQQRGGYGSSGNYGNNSGYGYRDQQGWRGGGGGGGYQQGGRGGYQQGR
GGGGYQQYGQRNQGYQQQQQRSYGGGGGYQGNNRGNSGYNNRGNHNRGGYQQRY
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccggcatttttccgttggcttagtcgaaaaaatccaactataatcgtgcat
tgtattgaggagaagccaaaggaagtcgatggcgtcaagatccctgtggacacaagccag
tctaatcccaatgactacgagtttgataacctctaccttgatatgaatgggattatccac
ccttgttgtcacccagaggacaaacctgcccccagaaatgaagatgaaatgatgatttta
atctttgagtacatagacagaattttctcgattgtgcgacccagaagagtgctttacatg
gccattgatggtgttgcaccaagggccaaaatgaatcaacagaggtccagaagattccga
gcatctaaagaaactaaagagaaaattgaagaaatggcacgtcttagggatgaactgagt
agtaaaggctataatcttcctccggagaaggaaaagggagagcactttgacagtaactgc
atcacaccgggtacccctttcatgttcagactggcagactgtctgcggtactacatacac
gagagactgaataatgaccctggctggcagaatatcaaaatcattctgtctgatgccaat
gtacctggagagggggaacacaaaatcatggatttcattaggagacaaagaggtcaacca
gatcatgacccaaacacaaagcattgtctttgtggagcagacgcggatttaatcatgttg
ggactagctactcatgaacctcattttacaatcattagagaagaatttaagcctaaccaa
cccaggccttgtgatttgtgtggacagttaggtcatgagatgaaagagtgtctaggttta
ccaaaggagatgtgtggagagaatgatgaattgcccaaactaatgggagcagagcaggag
tttatatttatcaggttaaatattttgcgagaatatttagaaagagagcttttaatggac
aacctacctttcaaatatgactttgagagagcgatagatgactgggtctttatgtgcttc
tttgtgggtaatgatttcctgcctcatttaccttcattggaaattagggagggagcaatt
gacagactggtcaaattgtacaaaagttgtgtgagaagaacagggggataccttaccaat
agcggggtggtcaatctagaacgagtacaagtggtcatgtcagatcttggacaagtggag
gatgaaattttcaagcgcagaagggaaactgagctggagttcaggagaagagacaagcag
aggaaacaaagggagaaaagatttgcagatggtccccggtggaccccaggaggtcagttt
gctcctcagcccctgggtcattctcacaattccccctcccccgttagtaacccccgacac
gaggcagctagaggacgagtagatagtatgaggaatacaactaataaaaatgctgcagca
gagctcagagccatgatgacaaaagatgatcagcgtggtgagaagagaaaatcgggggac
cagtcgaaaccagacgaggaggaggaagatgcggaaccagctgatgaagtcagactgtgg
gaggatggatggaaggacagatactacagctcaaagtttggagtcgatggctcagacgag
gaattcagacatacagtggcaaatcactatgtacgaggtctgtgttgggtcctgagatac
tactaccagggctgtgcctcctggaagtggtacttcccttaccactacgcaccttttgcc
tcagattttgtgaatatcgcacagctgtccaactcgttcgagaaacacacagtaccattt
aagcccctagaacagctgatgggcgtgtttccagccgccagtaagaaacaccttcctctc
acttggcagagacttatgtgtgatccagaatctcctatcatagatttttatccaactgat
tttaagattgatcttaatggtaaaaagtatgcttggcaaggtgtggcattactgccattt
gtggatgagaagaggttgttgtctgcattagagaaagtctaccctgatctctcagaggag
gaatgtgagcgcaacacatggggcaatgatcgactgtttgtgggcatcagacatccatcc
tattcatttttagagggtctctatgaaggcgagaaaacaacagagggagtacagttaaac
cccaagaattcagagggaatggcaggcttggtgtggtcggacaaaagggtcaccctgaca
ggagagactgttgagtccccactgaaagaactccaaccaatcacagacaacagggctctt
agtgttcattataaagacccacagtatgatgaagatcacttgtttgaggctgtggttctt
gaaggagctgtgatgccagacaaagtcctaaagcccgaggattttaatcagaggaaccca
ggtcggggctggcggccacaggtcggcatgtcgcgtaacagtatgtatcgtgggaaggat
atgggagcagccaaccgcatgatcagacatggagttgggaatcagtatggtgcaacaata
ccaccaccaagaaactttgggcagcaaggaggagggtaccaacaaagagggggatatggc
tcctctggtaactatggaaacaattctgggtatggctacagagatcagcaaggatggaga
ggtggtgggggaggaggtgggtaccagcaaggtggaagaggagggtaccagcaaggaaga
ggaggaggaggatatcagcaatatggtcaaaggaaccaaggttaccaacaacagcaacag
agaagctatggaggaggtggtggttaccaaggcaacaacagaggaaattctggatacaac
aatcgaggcaatcataatagagggggttatcagcagcgatattaa
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