Ostrea edulis (European flat oyster): 125652939
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Entry
125652939 CDS
T09123
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125652939
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125652939
Spliceosome [BR:
oed03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125652939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
DEAD
R3H
HA2_N
Ank_2
AAA_19
Ank_5
AAA_22
Ank
nSTAND3
Ank_3
ResIII
ATPase
Terminase_4
AAA_29
Flavi_DEAD
T2SSE
Pox_vIL-18BP
TrwB_AAD_bind
SRP54
AAA_7
AAA_11
Motif
Other DBs
NCBI-GeneID:
125652939
NCBI-ProteinID:
XP_048738383
LinkDB
All DBs
Position
5:complement(35837185..35866691)
Genome browser
AA seq
1574 aa
AA seq
DB search
MAARYEDLHRSINNGAQGSYNRAMMQSPSSSGSRPPSNSSVLSERGPKTREDVCIGEEVR
ISLHLAIERFRRNEEHKELEFPSSLTATERAYVHRYCDTIGLKHKSKGKGSNRLLTISKK
ELNQTQASASSIKIIRNSRQQICNLLQRFPLTSKERQELMPQMERSPGFDPNREAAKATI
GKLNNGVAQVPPPRIITDLDAFRSTLPVSQHKDEIIHSINSNRTILLTGETGSGKTTQIP
QMILDDCTENNKRCRILCTQPRRIAALSIAERVSAERGEKVGQTVGYQIRLESKVSPKTL
LTFCTNGVLLRTLMNGSHSLSTVTHIIVDEVHERDRFCDFLLTAIRDELPKFPHVKLILM
SASMNVDLFIRYFNNCPVLRYPGNIFEVEEYFLEDVLKWTGYTNKKMEKLKRGQSNLENQ
QLQLSQWCKIQMEGVPATAYSEEIEEKMAAELLEEGKVSETVAEKEELEPWLVKEMDDLL
SEVWLTGNEDCFSQLIHLIKSENVSVDYQHSETSLSPLMIAAARGFAAVVEHLLNFGADV
KLKSSNDWIALDFAKKFNQEEVIEMLQAYMVEYEMGPSDDIDALNTVPARTLSEEEKELL
NLYQHSFDDDKVDINLILHLLIKILSTSKDGAILVFLPGYDDIVTLRETIGDSKNMDKFR
YVLYTLHSSMQSNDQKRVFKSVPQGLRKIILATNIAETSITINDVVYVIDSGKVKEKAFD
ALLSLSTLKSTWISKASALQRKGRAGRCRPGVCYHLFSRIRQSMMQDFATPELLRYPLQE
ICLHTKLIAPIHCPIAEFLAKSPDPPPYMVTRNAVMLLKQIDALDTFEDLTEIGYHLADM
PLEPRLGKVVLYSIVLKCLDPVLTIVCALAYRDPFILPTVPYLKRAVDQVRRQYSSNTFS
DHMTLLRAFQGWQRARTDNCERSYCEKNFLSSACMEMIVGMRTQLLGQLRASGFVRARGG
GDIRDLNTNSENWAAVKAALCAGIYPNLVKVERSRNFKMVSQKSSGIKFHSSSVLKNPAL
SEKKSVQCLPTDWILYEEMSRYERSAYIRCCTAVSPVAVALFTGPIKLPAESVRDGAKSQ
GMLHGEMEDSSDSEGEEKEDNTKTTLQFDDWLSFRLDNDTANMVLQLRHKWNCLFLRRMR
APSKPWSQVDEAVIKAVISVLSNEEQALGFQQPAGIGQRPRPMTEYMSAGGGGYSSYDYE
DHSNRGRRTPVTPPKKNSSVLSKMPRTPGDTRSESSSTGSSPKSSTQTTPHNSPQSVSST
LASSSKSPIKYFVVKPNNQKILHVALSKSVYATSPKSEARFNKAIQDGKEVYLIFSTVGS
GHFQGYARVTGQSSKDKCPDMSGDGLGGTFKIEWLKEIAVPFRVANHITNSWNENKRVQY
SKDGHELESNCGEKLIQLLRTFDPKLYEVSSDELKENDEEPDLSSDKTSKSSYSEEDKDS
LLSDEERTKQEEGDKNTGNSKGRYPGQYQGQSRHQQGYEGQRPGSYPYTSSSQSHQYYHH
QQQGYHGGGGGGHYNSRMYNMGYPPPMGPNYNPMYMGMHSPPRHPLSSVMILQRGQRSGS
HFRGYHPGYGSGYH
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcgctatgaggatctgcatcgttccattaataatggggcacagggatcctat
aacagagccatgatgcagagtcctagcagtagtgggtcaaggccaccgagtaatagcagt
gttttgagtgaaagaggaccaaaaactagagaggatgtttgtattggagaggaagtcagg
atttctttacacctggcaattgaaagatttagaaggaatgaagaacacaaggaattagaa
tttccatcctcattgacagctacagaaagggcatatgttcacagatactgtgacacaatt
gggctcaagcacaagagcaagggtaaaggcagcaatagactgttgacaatatctaaaaag
gaactgaatcagacccaggcttcagcctcatcaatcaaaatcatcaggaactcccgacag
cagatatgtaacctgctgcagaggttcccactaacctccaaagaaagacaggaacttatg
ccacaaatggaaagaagtccagggtttgatccaaacagagaggctgctaaagcaactatt
ggcaaactaaataatggagtagcacaggttccccctcccaggattattacagacttggat
gcattcagaagcacactgcccgtgtctcaacacaaggatgagattatccacagcatcaat
tctaatagaaccattttacttacgggggaaactggatcagggaagacaactcagatacca
cagatgattcttgatgactgtactgaaaacaacaagagatgtcgtatactttgtacccaa
ccaaggagaatagcagcacttagcatagctgaaagagtctctgctgagagaggggagaaa
gtaggccagactgttggttatcagatccgccttgagagcaaggtatcaccaaagactctg
cttacattttgtacgaatggagttttgttaagaactttgatgaatggaagccattctttg
tcaactgtcactcatatcattgtggatgaagttcatgagagagacaggttctgtgatttc
cttctcactgccataagagatgaacttcctaagttcccacatgttaaactcattcttatg
agtgcatcaatgaatgtggacttgtttatcagatacttcaacaactgtccagttttaaga
tatcctggaaacatatttgaagttgaagaatatttcttggaggatgtgttgaagtggaca
ggatacacaaacaagaaaatggagaagctaaagaggggccagtcgaatttggagaatcaa
cagttacagttaagtcaatggtgtaagattcagatggaaggtgtccctgcgactgcttac
tcagaggagatcgaggagaaaatggctgcagaactgttagaggaggggaaagtttcagag
actgtggcagaaaaagaagagctggagccatggcttgtaaaggagatggatgatcttcta
agtgaggtctggctcacaggaaatgaagactgcttctctcaacttattcatcttatcaaa
agtgaaaatgtttcagtggactaccaacactcagaaaccagcctctctcctctgatgatt
gctgctgctcgtggctttgctgcagtagtggaacatctccttaactttggagctgatgtc
aaactaaagtcctctaatgactggatagcactagattttgccaagaaattcaatcaagag
gaagtgatagaaatgcttcaagcttacatggttgaatatgaaatgggaccatcagatgac
attgatgctcttaacactgtacctgcccgaactttgtctgaagaagaaaaagaactgctg
aatttgtatcaacacagctttgatgatgacaaagtggatattaatctcattctgcattta
ttgatcaagatactctctacaagcaaagatggtgccatattggtctttttgcctggttat
gatgatattgttacattaagagaaacaataggtgatagcaagaatatggacaaattcagg
tatgtgttgtacaccttgcattcatccatgcaatccaacgaccagaaaagggtgtttaaa
tctgttcctcaagggctgagaaaaataattcttgccactaatattgcagagactagtatt
acaatcaatgatgtcgtgtatgtgattgattcaggaaaggttaaagagaaagcctttgat
gccctcttgtcattgtcaacactgaagagtacttggatatctaaagctagtgcactgcag
agaaaggggagggctggtcgatgtagaccgggagtgtgttaccatttgttcagcagaata
agacaaagtatgatgcaagactttgccactcctgaactactgaggtatcctctccaggaa
atatgtcttcataccaagctgatagcaccaattcattgtccaatagcagaatttctggcc
aaatcaccagatcctcctccatacatggtgactagaaatgctgtaatgttactgaagcaa
atagatgcgttggacacttttgaggacttgacagaaatcggctaccatttagcagatatg
cctctagagccaaggctcggaaaagtggtgctgtattccattgtacttaaatgcctggac
cctgtgctgaccattgtgtgtgctttagcatacagagatccttttatccttcccactgtg
ccatatttaaagcgtgcagtagaccaggtcaggcgccagtacagttccaacaccttcagt
gatcacatgaccctcctcagagctttccaggggtggcaaagagctcgcactgacaattgt
gaaaggagttactgtgaaaagaattttctttcctctgcatgcatggaaatgattgttgga
atgaggactcagctcctaggtcagcttagggcctctgggtttgtccgagctagaggaggg
ggagatatacgtgatctgaacacgaattcagagaactgggcagcagtcaaagcagcttta
tgtgcagggatatatcccaacctggtgaaagttgaaagatctagaaacttcaaaatggtt
tcacagaagtcctctggtatcaagttccactcctcttcagtactgaagaatcctgctttg
tcagagaaaaagtctgtgcagtgtctacctacggactggattctgtatgaggagatgagt
cgctatgagaggagtgcctatatcaggtgctgcactgctgtgtctcctgttgctgtggct
cttttcacaggacccatcaaattacctgcagaaagtgtcagagatggagccaagtcacag
ggcatgctgcatggagaaatggaggacagtagtgacagcgagggagaggagaaggaggat
aacacaaaaacaactctgcagtttgatgattggttgtcatttagactggacaatgatact
gccaatatggtgcttcagcttagacacaaatggaattgcctcttcctcagaagaatgaga
gctccctccaaaccctggtcacaagttgatgaggcagtcatcaaagcagttatcagtgtt
ttgagtaatgaggagcaggccctagggtttcagcagcctgcaggaattggacagagacca
cgacctatgactgagtacatgtcagcgggcggtggaggctatagtagctatgattatgag
gaccacagtaacaggggtaggaggacaccggtcacccctcccaagaaaaacagcagtgtc
ctttccaaaatgccacgtacccctggggacacccgatcggagagttcttcaactggtagc
agtccaaagagcagtacacaaaccacccctcataacagtccccaatctgtcagttctact
ctagccagttccagtaaatctccaatcaaatactttgttgtcaaacccaacaatcagaaa
atactgcatgtagctttatcaaaatcagtttatgctacatcacccaaaagtgaagccaga
tttaacaaggcaatacaggatgggaaggaagtgtacctgatattctcaacagtaggcagt
ggacatttccagggttatgctagagtgacaggacagagcagcaaggacaaatgccctgat
atgtcaggagatggcctcggcggaacattcaaaattgaatggcttaaagagatagccgtg
ccatttagagttgcaaaccatataaccaatagttggaatgagaacaagagagtgcagtac
agtaaagatgggcatgagttggagtcaaattgtggagaaaagctcatccaactgctgcga
acttttgaccccaaactatatgaagtgtcgtcagatgaactgaaagaaaatgacgaagag
cctgacttatcaagtgacaaaacctcaaagtcttcatactcggaggaggataaagactcg
ctgctctcagatgaggaaagaactaaacaagaggaaggagacaaaaacaccggcaacagt
aagggcagatacccagggcaatatcaaggtcaaagtcgacatcaacagggttatgaaggt
cagaggccagggtcatatccttacacatcatcatcacagagtcatcaatactaccatcat
caacagcaaggttaccatggtggagggggaggtggacattataattctcgaatgtacaac
atgggataccctccccccatgggacctaactacaaccccatgtatatgggaatgcattct
cctcccagacatccactgtcgtctgtgatgatcctacagagaggtcaaaggtcaggaagt
cattttagaggttatcatccaggatatggttctggatatcactaa
DBGET
integrated database retrieval system
