KEGG   Ostrea edulis (European flat oyster): 125654079
Entry
125654079         CDS       T09123                                 
Name
(RefSeq) WD repeat-containing protein 82-like
  KO
K14962  COMPASS component SWD2
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    125654079
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oed03019]
    125654079
   03036 Chromosome and associated proteins [BR:oed03036]
    125654079
Messenger RNA biogenesis [BR:oed03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     125654079
Chromosome and associated proteins [BR:oed03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     125654079
    COMPASS/SET1 complex (yeast)
     125654079
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_NOL10_N Beta-prop_TEP1_C Beta-prop_WDR75_1st DSE1_N Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_1st Tricorn_2nd WDR90_beta-prop_4th WD40_RFWD3 PAC11 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 125654079
NCBI-ProteinID: XP_056001394
LinkDB
Position
7:78690546..78704356
AA seq 313 aa
MKLTDNVVRNYRVAKIFRENTDRINRIDFSSDGNTLISSSDDDSIVIYDCQNGTPKKTLN
SKKYGVDLICYTHAVNTALHGSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVSLNMSPIND
SFLSGSLDKTIRLWDLRSQNCQGLMHLPGRPVAAFDPEGLIFAAGINSECVKLYDLRSFD
RGPFTTFKLTQDKDCDWTGMKFSPDGKLILISTNGQILRLIDAFQGTPLQTFMGFQNNKG
IPLEASFSPDSRFAFCGSTDGRIHCWNTETGVKVAVMNADHPGPIQCLQFNPKYMMLASA
CTNMAFWLPYIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctcactgacaatgttgttcgtaattatagagtagcaaaaatattcagggaaaac
acagaccgcataaatagaatagatttttcgtcagacggcaacactttgatctctagcagt
gatgatgactcgatagtgatctatgattgtcaaaatggaacaccaaagaaaacattaaac
agcaagaagtatggggtggatttgatctgttacacacacgctgtcaacacagcgctccat
ggctccaccaaagtagatgatacaataagatacctttctttacacgacaacaagtacatc
agatattttcctggacataccaaaaaagttgtgtcccttaatatgtctccaatcaatgac
tccttcctgtctggttctttggacaagaccatcagactgtgggatctgaggtcacagaac
tgtcagggtctgatgcatttgccgggtcgtccagttgctgcctttgatcccgagggcctc
atttttgcagcagggataaattcagaatgtgtcaaactttacgaccttaggtcatttgac
aggggtccgtttaccacctttaaattgacacaggacaaggactgtgattggacgggaatg
aaattcagtccggacggaaaacttatccttatttccaccaatggacaaattctgagactc
attgatgccttccaagggacgccactccaaaccttcatggggttccagaacaacaaaggc
attccattagaggcctccttcagtccggactccagattcgcattctgtgggtcaacagac
ggacgaattcactgctggaacacggaaacgggggtcaaggtggcagtgatgaatgcagac
caccccggacccatccagtgtctgcagttcaaccccaagtacatgatgctagcctccgcc
tgtaccaacatggctttctggctgccctacattgatgactga

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