KEGG   Ostrea edulis (European flat oyster): 125655071
Entry
125655071         CDS       T09123                                 
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03013  Nucleocytoplasmic transport
oed04141  Protein processing in endoplasmic reticulum
oed04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    125655071
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    125655071
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    125655071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oed03019]
    125655071
   04131 Membrane trafficking [BR:oed04131]
    125655071
Messenger RNA biogenesis [BR:oed03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     125655071
Membrane trafficking [BR:oed04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    125655071
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    125655071
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    125655071
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 125655071
NCBI-ProteinID: XP_048741184
LinkDB
Position
7:66027081..66045898
AA seq 312 aa
MVSVINSIDTSHEDMIHDAQLDYYGTKLATCSSDRSIKIFDVKGGQQTLITELRGHDGPV
WQLAWAHPMFGNLIASCSYDRKVIIWKETNGSWGKLYEYQNHDSSVNSVNFAPHEFGLLL
ACGSSDGSISIISSSGDGTWDAKKIPNAHSIGCNAVSWAPPINPGDLLDPSGRHQPIKQL
VSGGCDNLVKIWKEEDGQWKEDQKLEGHSDWVRDVAWAPSIGLPKSIIASCSQDLRVIIW
MNDGNGWTQKVLNKFNDVIWHLSWSITGNILATSGGDNKVSLWKETLNGDWVCISDVNKG
QGQISDGQRSLS
NT seq 939 nt   +upstreamnt  +downstreamnt
atggtctccgtcatcaactcgatagacacctcacacgaggacatgattcatgatgctcag
ctggattactatggaacgaagctagccacttgttcatcggaccgatccatcaaaatattt
gatgtcaaaggcgggcagcagacgttaataacagaactcaggggtcacgacggacctgta
tggcagcttgcctgggctcaccctatgtttggaaatttgattgcttcatgcagttatgat
agaaaggttatcatctggaaagagacaaatggatcatggggaaagctctacgaatatcag
aaccacgactcctcagtgaactctgtgaactttgcccctcatgagtttggcctcctgttg
gcatgtgggagttctgatggttccatctccatcatatccagctcaggagatggaacatgg
gatgctaagaaaatacccaatgcccattctatcgggtgtaatgcagtaagctgggccccg
cccatcaacccaggagatttattggatccttcaggacgacatcagccaatcaaacagctt
gtctctgggggctgtgacaacctcgtcaaaatctggaaagaggaggatgggcagtggaaa
gaggaccagaaacttgaaggtcacagcgactgggtcagagacgttgcctgggcacccagt
ataggtctgcccaaaagcattatagcaagttgttcacaggatttgagggtcatcatctgg
atgaatgatggtaatgggtggacacagaaagtgttaaacaaatttaatgatgtaatctgg
catctcagctggtcaatcacgggcaatatactggctacatcaggaggagacaacaaggtc
agcctgtggaaggaaacattaaatggcgactgggtgtgtatcagtgatgtaaacaaaggt
caaggacaaatatcagatggccagaggtcgttgtcatag

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