Ostrea edulis (European flat oyster): 125655468
Help
Entry
125655468 CDS
T09123
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oed03016
]
125655468
Enzymes [BR:
oed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125655468
Transfer RNA biogenesis [BR:
oed03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125655468
Prokaryotic type
tRNA splicing ligases
125655468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
M11L
Motif
Other DBs
NCBI-GeneID:
125655468
NCBI-ProteinID:
XP_048741732
LinkDB
All DBs
Position
7:3489719..3504489
Genome browser
AA seq
506 aa
AA seq
DB search
MVVRTYNEELKYLEKISNCCWKIKKGFVENMNVEGVFYTSESLERLMFDELKQSCRTQGY
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMSNPESVVSPGGVGFD
INCGVRLIRTNLSEKDVAPVKEQLAQCMFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPSKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
KFAAKKMGIESKGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDKINVNDRQLACARIN
SQEGQDYLKGMAAAANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVE
EHFVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGM
EETYGTTCHGAGRALSRAKSRRNLDYTEVLSALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHMAGISRKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagaacatacaatgaagagcttaaataccttgagaaaattagcaattgttgc
tggaaaataaagaaaggatttgtggaaaatatgaatgtagagggcgtattctatacaagt
gagtcattggaaagacttatgtttgatgaactaaagcagtcatgtcgcacccaaggatac
ggtggattcctgccaggaatgaaacagatcggaaacgtggcagctctgccgggaattgta
gggaaatctatcgggcttcctgatgtccattctggttacgggtttgcaataggaaacatg
gctgcctttgacatgagtaatcctgaatcagtggtctcccctggtggggtggggttcgac
atcaactgtggagtccgcctcattcgcaccaatctgtctgagaaggacgtggcccccgtc
aaagaacaacttgctcagtgtatgtttgatcacatccctgtgggcgtcgggtccaaggga
atcattcccatgactgcacagaatttagaagaggctttagaaatggggatggactggtct
ctcagggaaggatatgcctgggcagaggataaggaacactgtgaggagtacggcagaatg
ttacaggcggatccctctaaagtcagcagccgggccaagaaacggggcctcccacagctg
ggaactctgggagctggtaaccactatgctgagatacaggtagtggacgagatctacaat
aagtttgctgctaagaagatgggtatagagtccaagggacaagtgtgtgtaatgattcac
tgtggaagtcgagggctggggcaccaggtagcaacagatgcattggttgctatggaaaag
gcaatgaagcgtgacaaaatcaatgtgaatgaccgacagctcgcctgtgctagaattaac
tcccaggaaggacaagactacctcaaaggaatggcggcagccgctaattatgcatgggtc
aatcgctcaagcatgactttcctctgtcgacaggcctttgctaagatgtttgacagtacc
ccagatgaccttgacatgtttatgatttatgatgtatcacacaatattgcgaaagtggag
gaacatttcgtggatggcaaacagaagactctgctggtccacaggaaaggttccacccgc
gcgttccctccccaccacccactcattccagtggactaccagctgactggacagcctgtt
ctgattggaggaaccatgggaacgtgtagctatgtgttgactggtacccagcaggggatg
gaagaaacgtacggcaccacatgtcacggagctggacgtgcgttgtctcgagccaagtca
cggaggaatctcgactacacagaagttttgtctgctttggaggaaaaggggatcagtata
agagtagcctcccctaagttggtcatggaggaggcgccagagtcctacaagaatgtcaca
gatgttgtggacacatgtcacatggcaggaattagtcggaaggccattaaacttcgtcca
atcgcggttataaagggataa
DBGET
integrated database retrieval system
