Ostrea edulis (European flat oyster): 125657348
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Entry
125657348 CDS
T09123
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125657348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125657348
03400 DNA repair and recombination proteins [BR:
oed03400
]
125657348
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125657348
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
125657348
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
125657348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
RecQ_Zn_bind
Chal_sti_synt_N
Motif
Other DBs
NCBI-GeneID:
125657348
NCBI-ProteinID:
XP_056002306
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All DBs
Position
8:47997589..48002678
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AA seq
464 aa
AA seq
DB search
MIFGKQSSMEAPLLTKVGEVFEVEKLSAQQEKAISSLLDNRDVFLSLRTGGGKSLCYMAF
PLFYERMYQPQLAHVLIVSPLLAIMKEQTEFLKSKGFTATYIGKDANEDDGILAGEYQFL
FTSPEAVLQNDKWRNMLSSSKSFRLFVVDEAHTVVHWGESTMHIQAFREWFSRTGEIRSL
ISCPALVITATASKEARKLIRKRLALNNCVDIIDSPDRENIKLFLEKIKNTVPIEVTFGW
LLKDLSLEKKDCTRTLVFCSSIKTCADIYTAFLMVLDKSVMEYVNMFHSCTSETVKEKIR
QDMNDENGTIRVLIATSAAGMGVNYKGINNVVHYGPPKDMDSFVQQLGRAGRDGCQALHL
LIYNSRHTHKLDSDMKNYIENKDKCRRLQMLQSYDSLPNGKGIKHLCCDICSQKCDCEDK
CCLQFQHPFHLYKTDDDSSDESFCMSDDTDFEFDDEDDDTFDVM
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatattcggaaaacaatcaagtatggaagcgccattattgacgaaagtcggagaagtt
tttgaagtggaaaagctaagtgctcaacaagaaaaggcaattagtagtcttttagataat
cgggatgtgttcctctccctgagaactggtggtggaaaatcactctgttacatggcattt
cctttgttttacgaacgcatgtaccaaccacaacttgcacacgtacttattgttagtccc
ctccttgctattatgaaggaacagactgaatttttgaaatcaaaaggatttacagcaacc
tacattggtaaagatgcgaacgaggacgatgggatccttgctggtgaataccaatttctc
ttcacttcaccagaagctgttttacagaatgacaaatggcggaatatgttgtcatcatcc
aagtccttccgattatttgttgttgatgaagcccatactgttgttcattggggagaaagt
acaatgcatatccaggcttttagggaatggttttcacggaccggggagataagatcattg
atcagttgtcctgccttagtgatcacagccactgctagtaaggaagcaagaaaattaatt
aggaaacgacttgctctaaacaactgtgtagacattattgacagtccagatagggaaaac
ataaaattatttctggaaaagattaaaaacactgtgcctattgaagtgacatttggttgg
ttactaaaggacttgtctcttgagaaaaaggactgtaccagaacacttgtattttgttca
agtataaaaacttgtgcagacatatatactgcatttctgatggtgttggacaagtctgtt
atggaatatgtcaatatgtttcattcttgtacatctgaaacagtgaaggaaaaaattaga
caggacatgaatgatgagaatgggacaatacgagtcttaattgctacaagtgcagcaggt
atgggggtgaattataaaggcatcaacaatgttgtacattatggtccacctaaagatatg
gacagtttcgttcaacagcttgggcgtgctggtcgtgatggttgtcaagctttgcatctg
cttatttacaacagcagacacacacacaaacttgattctgacatgaaaaattacattgag
aataaagataaatgccgtagacttcaaatgttacaatcatacgattctcttccaaatgga
aaaggtatcaagcatctgtgttgtgatatttgctcacagaaatgtgattgtgaagacaag
tgttgtttacagtttcagcacccatttcatttatacaaaactgatgatgattcaagtgat
gaaagtttttgtatgtcagatgacacagattttgagtttgatgatgaggatgatgataca
tttgatgtaatgtag
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