Ostrea edulis (European flat oyster): 125659007
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Entry
125659007 CDS
T09123
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oed03036
]
125659007
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oed00535
]
125659007
Chromosome and associated proteins [BR:
oed03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
125659007
Meiosis-specific proteins
Cohesin complex and associated proteins
125659007
Proteoglycans [BR:
oed00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125659007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tetraspanin
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_29
FtsK_SpoIIIE
MtrG
Phage_holin_3_6
CD20
Motif
Other DBs
NCBI-GeneID:
125659007
NCBI-ProteinID:
XP_056004715
LinkDB
All DBs
Position
9:17484590..17539225
Genome browser
AA seq
1456 aa
AA seq
DB search
MPCCSNDSFVNPIVKYILFFFNFLCWLFGGVLIGIGIWAYIEKHKYYHKEIESVYDIIFD
LAIIFLVLGAVIFILGYAGCIGALRENVYLLKFYYFAMLAIFLLMVVGAVLAFVFRDKFK
QNFESLLQENLITTYQDDPDKQSTIDWLQEQLGCCGVKNYRDWNKNQYYNCSDDGQGNPS
PLACSVPHSCCKVQDILMAGVPNILCGSNVLKMGGDTSIIYTIGCIDAVQGLVETQLPII
GGITLGIAFIQVIIQGFRSYRDQTVVEPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDEFS
HLRPEQRQALLHEGTGPRVISAFVEIIFDNSDNRIPIDKDEVVLRRVIGSKKDQYFLDKK
MVTKGDVMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRIKLLREVAGTKVYDERKEE
SKVILRETEGKREKINDLLKYIEERLATLEDEKEELKEYQKWDKMRRSLEYTIHDHELRD
TRKKLDELQEKRDNSGAMTQKIRDKQQSTVDRVKSITRELRDLKTKMQGVMEEKENMNSD
NQEVTKRRAKLELMIKDIQDELEGDKSARSKSEDELKKIHEKIAKTQQQLENNLPLYEAQ
KQREENCTQQLSLAEQRRKELYAKQGRGNQFTSRDDRDNWIKKELKSLNRAIRDKEEQIK
RLREDLVNDNKRAEHLGTQTLEISSKIDQNKDIIEQNNRNFNEMKKQRDALQNERNTLWR
QETVLQQELQSVREELSKKEQGLRSMIGKATLNGIDSVQKVLDSFREQGKFPEVVDGYHG
TLIAQLDCEKTFFTCVEVTAGNRLFHHVVDSDKTGTKILTEMNRLRLPGEVTLMPLNKLD
GKETQYPTTNDAIPMISKIKFERPFARAMNHVFGKTLICRNMETATQIARTQNLDCITLE
GDQVSRRGALTGGYYDMRRSRLDLQKGKVEFERKLADQEKEYNEHKQKLEAVESKINNLV
SEMQKMETRNSKNKDTFDKMRADLRLMTEEKQAIEKSMLSKETSVASLKASLETMQGSAA
SLNEELGSDLLSQLSVEDQREVDYLNDQIKNLTQQNKEALTERIRLEGEKNKLENLLHNN
LMKKRDRIMHDLQEVSVADRRQKLDQFQTELDQEDEKLANFKEQNKDLDSQLEKMNKEQK
ELQSNLENWRAKEKEYQEKISDDAKDLEKMTNKQSLLLKKKDECMKKIRELGSLPSDAFE
KYQSFNLKQLFKKLENCNQELKRYSHVNKKALDQFVNFSDQKEKLIKRKEELDSAHQSIL
DLMNSLDQRKYEAIQLTFKQVSKYFSEIFRKLAPQGHAQLVMKKGDADQNDDEDSQDSVP
LVEQFTGVGIKVSFTGNKAEMRDMQQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEIDQA
LDSSHRKAVADMIHELAXAQFITTTFRPELLEHADKFYGVKFRNKVSHIECVSKEEAEDL
WRRHHTRLTRGRAARR
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgccttgttgtagtaatgactcttttgttaatcccattgtgaagtacattcttttcttt
ttcaactttctttgctggctgtttggaggtgtacttataggaattggcatttgggcttac
attgaaaaacacaagtattaccataaggagattgagtctgtgtacgacatcatctttgat
ctggccatcatcttcctggtccttggggctgtcatctttatcttgggatatgcaggatgt
attggagctctcagagagaatgtttaccttttgaagttttactattttgccatgctagca
atatttctcttgatggtcgttggtgctgtgttggcgtttgttttccgtgacaaatttaaa
caaaattttgaatcccttctgcaagagaacctgatcacaacatatcaggatgaccccgat
aaacagagcactattgattggttacaagaacagctgggttgttgtggcgtgaaaaattac
cgggactggaacaagaatcagtattataactgttcagatgatgggcagggtaaccccagt
ccactggcctgcagtgtacctcactcttgctgtaaggtccaggatattctgatggcagga
gttccaaatatattgtgtggaagtaatgttctcaaaatggggggtgacacttctataata
tacactattggctgtatcgatgctgttcagggcctggttgagactcaactccccattatt
ggtgggatcacgcttggcatcgctttcattcaggtaattatccaggggtttagaagttac
agggatcaaactgttgtcgaacctttcagccccaaacacaatgtcatagttggcagaaat
gggtcagggaaaagtaactttttctatgctatccagtttgtcctttcggatgaattcagt
catcttagaccagaacagaggcaagctcttcttcatgaaggaacgggtccaagggttatt
tccgcgtttgtggaaattatatttgacaattcagataacagaataccaattgacaaagat
gaagttgtactcaggcgtgtcattggatccaagaaagatcagtactttttagataagaaa
atggtcacgaagggtgatgtaatgaacttgttagaaagtgctggattttctcgaagtaac
ccgtactatattgttaagcagggaaagattaatcaaatggcaacagctcctgactctcag
agaatcaaacttcttagagaagtggcaggaactaaagtttatgatgaaagaaaagaggag
agtaaagtcattctaagagaaaccgagggtaagagagagaagataaatgatctgttaaag
tatatagaggagagactggccacattagaggatgagaaagaggaacttaaagaatatcag
aagtgggacaagatgagaagatcattagaatataccattcatgaccatgaactgagagac
accaggaaaaagttagatgagctgcaagagaaacgagataacagtggtgccatgacccaa
aagattcgagacaaacagcagtctactgtcgaccgagttaagtccataaccagagaactc
cgagacctgaagactaaaatgcagggagttatggaagagaaagaaaacatgaactcagac
aaccaagaagtgaccaaacgcagagccaagctggagttaatgatcaaggatattcaggat
gaactagagggggacaagagtgctaggagcaagtccgaggatgaactgaagaagatacat
gaaaagattgctaaaacccagcagcagctggaaaacaacttgcctctgtatgaagctcag
aaacaaagggaagagaactgtacccaacagttatctttagcggagcaaaggcgtaaagaa
ttgtatgccaaacaaggcagggggaaccagtttacatctagagatgaccgagacaactgg
attaaaaaagagttgaaatctctcaatagggcaatccgggataaagaagaacagatcaag
agactgagagaagatttagtgaatgataacaaacgagctgaacacctaggaactcagact
ctggaaattagcagcaaaattgatcagaataaagacataattgaacagaacaacagaaat
tttaatgagatgaagaaacagagggatgcattacaaaatgaaagaaatacattatggagg
caagaaacagtactacaacaagaactgcagagtgttcgagaagaattaagtaaaaaagaa
cagggtctaaggtccatgattggcaaggcgaccctgaatggaatagatagtgttcagaaa
gtgctagattcctttcgggagcagggcaaatttccagaagtggtggatggataccatgga
acgctgatagctcagctggactgtgaaaagacattctttacctgtgtggaagtaacagct
gggaacagactgtttcatcatgtggtggattctgacaaaacgggcacaaagatccttaca
gaaatgaatcgtcttcgactaccaggggaggtcactctaatgccgcttaataaattggac
ggcaaggaaacccagtatcccaccacaaatgatgccattcctatgattagcaaaattaaa
tttgaacgtccatttgcccgtgcaatgaatcatgtgttcggaaaaaccttaatatgtcgc
aatatggagactgccacccagattgcaagaacccaaaacttggattgtataacgttagag
ggtgaccaggtgagtcgtcgtggagctttgactggaggttattatgacatgcggcggtca
cggcttgatctccagaagggcaaggtggagttcgaacgaaaacttgctgatcaagaaaaa
gagtacaatgaacacaaacagaagctggaggcggtcgagtccaagatcaacaacctagtc
agcgagatgcagaaaatggaaaccagaaacagcaaaaacaaagacacctttgacaaaatg
agggcagatttgagacttatgacagaggaaaaacaagcaatagaaaaatccatgttgtca
aaggaaaccagtgtagccagtcttaaagccagtctagaaacgatgcagggttccgctgct
tcattaaatgaagagctgggatccgatttactgtcacagctcagtgtggaggatcagagg
gaggtggactatcttaatgatcaaatcaagaatctcacccagcagaacaaggaagcactt
acagagagaattaggctggaaggtgaaaagaataagttagagaatctgctgcataacaac
ctgatgaagaaaagagaccgcatcatgcacgacctgcaggaagtttcggtagctgaccgc
cgtcagaagctggaccagttccagacagaactagatcaggaggatgaaaaactggccaat
ttcaaggaacaaaacaaagatttggattcacagctcgaaaagatgaataaagaacagaaa
gaattacagtccaacctagagaactggagagcaaaagaaaaagaatatcaagagaaaatc
tcagacgatgccaaagatttagagaagatgacaaataaacagagcttgttgttgaaaaag
aaagatgaatgcatgaagaaaatcagagaactaggatcgctaccaagtgatgcatttgaa
aagtatcaaagctttaatcttaaacagctatttaaaaaactagagaattgcaaccaagaa
ctaaaaagatacagccatgtaaacaagaaagcattagatcagtttgtgaacttctcagat
cagaaagaaaaacttatcaagagaaaggaggagcttgatagtgctcatcagtcaattttg
gatctgatgaattcattggaccaaagaaaatatgaggccatacaacttacttttaaacag
gtgtccaagtacttcagtgagattttcagaaaattggctccacaaggtcatgcccagcta
gtgatgaaaaagggggatgcagaccagaatgatgatgaggactcgcaagattcagtcccc
ctggtggaacagtttacaggggtgggaataaaggtttctttcactggaaacaaggccgag
atgagagacatgcagcagctctctggaggacagaagtcacttgttgctttgaccctgatc
tttgcaattcagaaatgtgaccctgccccattttacctttttgatgaaattgatcaggct
ctggactcgagtcacaggaaagctgtggcagatatgatccatgaattggcanatgcccag
tttattacaacaacatttagacctgaattactagagcatgcagacaagttttacggtgtg
aagtttagaaataaggtgtctcatatagagtgtgtaagtaaggaggaagcggaggatttg
tggaggcgacaccacacacggctgacacgtgggagggcggctcgacgatga
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integrated database retrieval system
